AT2G28000 (CH-CPN60A, CPN60A, SLP)

Aliases : CH-CPN60A, CPN60A, SLP

Description : chaperonin-60alpha

Gene families : OG0000688 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000688_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G28000

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00080200	CH-CPN60A,...	External stimuli response.temperature.Hsp...	0.06	OrthoFinder output from all 47 species
AMTR_s00062p00185880	CH-CPN60A,...	External stimuli response.temperature.Hsp...	0.03	OrthoFinder output from all 47 species
AMTR_s00106p00119930	CPN60B, LEN1,...	External stimuli response.temperature.Hsp...	0.05	OrthoFinder output from all 47 species
Aev_g09354	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g11289	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g02236	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g08635	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.05	OrthoFinder output from all 47 species
Als_g10775	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g08982	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g02895	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g06115	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g13419	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.13	OrthoFinder output from all 47 species
Aop_g21866	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.1	OrthoFinder output from all 47 species
Azfi_s0001.g000356	No alias	chaperone *(Hsp60) & original description: CDS=314-2140	0.04	OrthoFinder output from all 47 species
Azfi_s0029.g024060	CPN60B, LEN1	chaperone *(Hsp60) & original description: CDS=155-2068	0.02	OrthoFinder output from all 47 species
Azfi_s0217.g058536	CPN60B, LEN1	chaperone *(Hsp60) & original description: CDS=281-2059	0.08	OrthoFinder output from all 47 species
Ceric.03G036700.1	CH-CPN60A,...	chaperone *(Hsp60) & original description:...	0.05	OrthoFinder output from all 47 species
Ceric.21G040000.1	Ceric.21G040000	chaperone *(Hsp60) & original description:...	0.11	OrthoFinder output from all 47 species
Ceric.32G022500.1	CPN60B, LEN1,...	chaperone *(Hsp60) & original description:...	0.08	OrthoFinder output from all 47 species
Cre04.g231222	CH-CPN60A, CPN60A, SLP	External stimuli response.temperature.Hsp...	0.09	OrthoFinder output from all 47 species
Cre07.g339150	No alias	External stimuli response.temperature.Hsp...	0.12	OrthoFinder output from all 47 species
Cre17.g741450	CPN60B, LEN1	External stimuli response.temperature.Hsp...	0.04	OrthoFinder output from all 47 species
Dac_g15357	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g08839	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g09873	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.08	OrthoFinder output from all 47 species
Dcu_g19819	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g03882	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.03	OrthoFinder output from all 47 species
Dde_g07618	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g08062	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08500	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01025490001	No alias	External stimuli response.temperature.Hsp...	0.14	OrthoFinder output from all 47 species
GSVIVT01031526001	CH-CPN60A, CPN60A, SLP	External stimuli response.temperature.Hsp...	0.2	OrthoFinder output from all 47 species
LOC_Os06g02380.2	CPN60B, LEN1,...	subunit beta of Cpn60 chaperonin complex. component...	0.12	OrthoFinder output from all 47 species
LOC_Os09g38980.1	EMB3007, LOC_Os09g38980	subunit alpha of Cpn60 chaperonin complex. component...	0.02	OrthoFinder output from all 47 species
LOC_Os12g17910.1	CH-CPN60A,...	subunit alpha of Cpn60 chaperonin complex. component...	0.04	OrthoFinder output from all 47 species
Len_g45333	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g12872	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g12886	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
MA_10436772g0010	CH-CPN60A, CPN60A, SLP	chaperone (Hsp60)	0.03	OrthoFinder output from all 47 species
MA_587689g0010	CH-CPN60A, CPN60A, SLP	RuBisCO large subunit-binding protein subunit alpha...	0.05	OrthoFinder output from all 47 species
MA_97627g0010	No alias	Chaperonin 60 subunit beta 2, chloroplastic...	0.03	OrthoFinder output from all 47 species
Mp1g21640.1	No alias	subunit beta of Cpn60 chaperonin complex. component...	0.04	OrthoFinder output from all 47 species
Mp5g20470.1	CH-CPN60A, CPN60A, SLP	subunit alpha of Cpn60 chaperonin complex. component...	0.02	OrthoFinder output from all 47 species
Msp_g06450	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g08431	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.04	OrthoFinder output from all 47 species
Nbi_g13552	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g30013	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g08643	No alias	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Pp3c16_4660V3.1	CPN60B, LEN1, Pp3c16_4660	chaperonin 60 beta	0.04	OrthoFinder output from all 47 species
Pp3c24_12180V3.1	CH-CPN60A,...	chaperonin-60alpha	0.08	OrthoFinder output from all 47 species
Ppi_g32241	No alias	chaperone *(Hsp60) & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g40159	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0002.g001253	CH-CPN60A, CPN60A, SLP	regulatory factor SNX2 of Retromer protein recycling...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0065.g016064	No alias	chaperone *(Hsp60) & original description: CDS=1-1875	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0182.g024885	CPN60B, LEN1	chaperone *(Hsp60) & original description: CDS=136-1980	0.05	OrthoFinder output from all 47 species
Sam_g15739	No alias	chaperone *(Hsp60) & original description: none	0.06	OrthoFinder output from all 47 species
Sam_g24182	No alias	chaperone *(Hsp60) & original description: none	0.04	OrthoFinder output from all 47 species
Smo165043	No alias	External stimuli response.temperature.Hsp...	0.11	OrthoFinder output from all 47 species
Solyc01g028810.3.1	Solyc01g028810	subunit beta of Cpn60 chaperonin complex. component...	0.08	OrthoFinder output from all 47 species
Solyc11g069790.2.1	CH-CPN60A,...	subunit alpha of Cpn60 chaperonin complex. component...	0.18	OrthoFinder output from all 47 species
Spa_g07167	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.11	OrthoFinder output from all 47 species
Spa_g09931	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.08	OrthoFinder output from all 47 species
Spa_g26363	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.15	OrthoFinder output from all 47 species
Tin_g06608	CH-CPN60A, CPN60A, SLP	chaperone *(Hsp60) & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g27931	CPN60B, LEN1	chaperone *(Hsp60) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e006438_P001	CH-CPN60A,...	subunit alpha of Cpn60 chaperonin complex. component...	0.08	OrthoFinder output from all 47 species
Zm00001e029825_P001	CPN60B, LEN1,...	subunit beta of Cpn60 chaperonin complex. component...	0.05	OrthoFinder output from all 47 species
Zm00001e031536_P001	CH-CPN60A,...	subunit alpha of Cpn60 chaperonin complex. component...	0.03	OrthoFinder output from all 47 species
Zm00001e036666_P003	Zm00001e036666	subunit beta of Cpn60 chaperonin complex. component...	0.06	OrthoFinder output from all 47 species
Zm00001e037002_P001	CH-CPN60A,...	Chaperonin 60 subunit alpha 1, chloroplastic...	0.06	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
CC	GO:0005739	mitochondrion	IDA	Interproscan
CC	GO:0005840	ribosome	None	Extended
BP	GO:0006457	protein folding	TAS	Interproscan
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISS	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009532	plastid stroma	None	Extended
CC	GO:0009536	plastid	None	Extended
CC	GO:0009570	chloroplast stroma	IDA	Interproscan
CC	GO:0009579	thylakoid	IDA	Interproscan
BP	GO:0009657	plastid organization	None	Extended
BP	GO:0009658	chloroplast organization	IMP	Interproscan
BP	GO:0009658	chloroplast organization	RCA	Interproscan
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	RCA	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016226	iron-sulfur cluster assembly	RCA	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
BP	GO:0031163	metallo-sulfur cluster assembly	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031975	envelope	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0048481	plant ovule development	RCA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0099402	plant organ development	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0005488	binding	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
MF	GO:0005516	calmodulin binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006081	cellular aldehyde metabolic process	IEP	HCCA
BP	GO:0006094	gluconeogenesis	IEP	HCCA
BP	GO:0006096	glycolytic process	IEP	HCCA
BP	GO:0006165	nucleoside diphosphate phosphorylation	IEP	HCCA
BP	GO:0006534	cysteine metabolic process	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006757	ATP generation from ADP	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006970	response to osmotic stress	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0009069	serine family amino acid metabolic process	IEP	HCCA
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009132	nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009135	purine nucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009144	purine nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009179	purine ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009185	ribonucleoside diphosphate metabolic process	IEP	HCCA
BP	GO:0009199	ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009205	purine ribonucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009240	isopentenyl diphosphate biosynthetic process	IEP	HCCA
BP	GO:0009266	response to temperature stimulus	IEP	HCCA
BP	GO:0009408	response to heat	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
CC	GO:0009535	chloroplast thylakoid membrane	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009651	response to salt stress	IEP	HCCA
BP	GO:0009704	de-etiolation	IEP	HCCA
BP	GO:0010035	response to inorganic substance	IEP	HCCA
BP	GO:0010038	response to metal ion	IEP	HCCA
BP	GO:0010157	response to chlorate	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016052	carbohydrate catabolic process	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
BP	GO:0019319	hexose biosynthetic process	IEP	HCCA
BP	GO:0019344	cysteine biosynthetic process	IEP	HCCA
BP	GO:0019682	glyceraldehyde-3-phosphate metabolic process	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0033365	protein localization to organelle	IEP	HCCA
CC	GO:0034357	photosynthetic membrane	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
CC	GO:0042651	thylakoid membrane	IEP	HCCA
BP	GO:0043085	positive regulation of catalytic activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0044093	positive regulation of molecular function	IEP	HCCA
BP	GO:0045036	protein targeting to chloroplast	IEP	HCCA
BP	GO:0045037	protein import into chloroplast stroma	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046031	ADP metabolic process	IEP	HCCA
BP	GO:0046034	ATP metabolic process	IEP	HCCA
BP	GO:0046364	monosaccharide biosynthetic process	IEP	HCCA
BP	GO:0046490	isopentenyl diphosphate metabolic process	IEP	HCCA
BP	GO:0046686	response to cadmium ion	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0046939	nucleotide phosphorylation	IEP	HCCA
BP	GO:0050790	regulation of catalytic activity	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0051341	regulation of oxidoreductase activity	IEP	HCCA
BP	GO:0051353	positive regulation of oxidoreductase activity	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
CC	GO:0055035	plastid thylakoid membrane	IEP	HCCA
BP	GO:0065002	intracellular protein transmembrane transport	IEP	HCCA
BP	GO:0065009	regulation of molecular function	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071806	protein transmembrane transport	IEP	HCCA
BP	GO:0072594	establishment of protein localization to organelle	IEP	HCCA
BP	GO:0072596	establishment of protein localization to chloroplast	IEP	HCCA
BP	GO:0072598	protein localization to chloroplast	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1901668	regulation of superoxide dismutase activity	IEP	HCCA
BP	GO:1901671	positive regulation of superoxide dismutase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002423	Cpn60/GroEL/TCP-1	68	571

External Links

No external refs found!

AT2G28000 (CH-CPN60A, CPN60A, SLP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation