AT2G25660 (emb2410)

Aliases : emb2410

Description : embryo defective 2410

Gene families : OG0003871 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003871_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G25660

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00142p00090900	emb2410,...	No description available	0.06	OrthoFinder output from all 47 species
Ala_g14706	emb2410	component *(Tic236) of inner envelope TIC translocation...	0.04	OrthoFinder output from all 47 species
Als_g01992	emb2410	component *(Tic236) of inner envelope TIC translocation...	0.04	OrthoFinder output from all 47 species
Aspi01Gene67706.t1	emb2410, Aspi01Gene67706	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0010.g012375	emb2410	component *(Tic236) of inner envelope TIC translocation...	0.06	OrthoFinder output from all 47 species
Ceric.14G073200.1	emb2410, Ceric.14G073200	component *(Tic236) of inner envelope TIC translocation...	0.08	OrthoFinder output from all 47 species
Dcu_g04999	emb2410	component *(Tic236) of inner envelope TIC translocation...	0.03	OrthoFinder output from all 47 species
GSVIVT01035727001	emb2410	No description available	0.07	OrthoFinder output from all 47 species
Gb_34395	emb2410	no description available(sp\|w0ryd3\|ssg4_orysj : 233.0)	0.06	OrthoFinder output from all 47 species
Gb_34399	emb2410	component Tic236 of inner envelope TIC translocation system	0.03	OrthoFinder output from all 47 species
Gb_34400	emb2410	component Tic236 of inner envelope TIC translocation system	0.03	OrthoFinder output from all 47 species
LOC_Os01g08420.1	emb2410, LOC_Os01g08420	component Tic236 of inner envelope TIC translocation system	0.08	OrthoFinder output from all 47 species
MA_196707g0010	emb2410	no description available(sp\|f4isl7\|ti236_arath : 243.0)	0.05	OrthoFinder output from all 47 species
MA_59214g0010	emb2410	no description available(sp\|f4isl7\|ti236_arath : 202.0)	0.02	OrthoFinder output from all 47 species
Mp3g15020.1	emb2410	component Tic236 of inner envelope TIC translocation system	0.03	OrthoFinder output from all 47 species
Msp_g15704	emb2410	component *(Tic236) of inner envelope TIC translocation...	0.02	OrthoFinder output from all 47 species
Msp_g23061	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ore_g38227	emb2410	component *(Tic236) of inner envelope TIC translocation...	0.03	OrthoFinder output from all 47 species
Pir_g02009	emb2410	component *(Tic236) of inner envelope TIC translocation...	0.03	OrthoFinder output from all 47 species
Pp3c4_150V3.1	emb2410, Pp3c4_150	embryo defective 2410	0.01	OrthoFinder output from all 47 species
Ppi_g32116	emb2410	component *(Tic236) of inner envelope TIC translocation...	0.02	OrthoFinder output from all 47 species
Sam_g40556	No alias	component *(Tic236) of inner envelope TIC translocation...	0.06	OrthoFinder output from all 47 species
Smo439584	emb2410	No description available	0.06	OrthoFinder output from all 47 species
Zm00001e016691_P001	emb2410, Zm00001e016691	component Tic236 of inner envelope TIC translocation system	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009606	tropism	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009629	response to gravity	None	Extended
BP	GO:0009630	gravitropism	RCA	Interproscan
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0048046	apoplast	IDA	Interproscan
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0000976	transcription cis-regulatory region binding	IEP	HCCA
MF	GO:0000977	RNA polymerase II transcription regulatory region sequence-specific DNA binding	IEP	HCCA
MF	GO:0000979	RNA polymerase II core promoter sequence-specific DNA binding	IEP	HCCA
MF	GO:0001046	core promoter sequence-specific DNA binding	IEP	HCCA
MF	GO:0001067	transcription regulatory region nucleic acid binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
MF	GO:0004694	eukaryotic translation initiation factor 2alpha kinase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006521	regulation of cellular amino acid metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
CC	GO:0009527	plastid outer membrane	IEP	HCCA
CC	GO:0009707	chloroplast outer membrane	IEP	HCCA
BP	GO:0010017	red or far-red light signaling pathway	IEP	HCCA
BP	GO:0010019	chloroplast-nucleus signaling pathway	IEP	HCCA
BP	GO:0010155	regulation of proton transport	IEP	HCCA
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
BP	GO:0018105	peptidyl-serine phosphorylation	IEP	HCCA
BP	GO:0018209	peptidyl-serine modification	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
CC	GO:0031969	chloroplast membrane	IEP	HCCA
BP	GO:0033238	regulation of amine metabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
BP	GO:0062012	regulation of small molecule metabolic process	IEP	HCCA
BP	GO:0071478	cellular response to radiation	IEP	HCCA
BP	GO:0071482	cellular response to light stimulus	IEP	HCCA
BP	GO:0071489	cellular response to red or far red light	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1904062	regulation of monoatomic cation transmembrane transport	IEP	HCCA
MF	GO:1990837	sequence-specific double-stranded DNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007452	TamB	1753	2150

External Links

No external refs found!

AT2G25660 (emb2410)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation