AT2G22680

Description : Zinc finger (C3HC4-type RING finger) family protein

Gene families : OG0000599 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000599_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G22680

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00148p00068590	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
AT3G54780	No alias	Zinc finger (C3HC4-type RING finger) family protein	0.01	OrthoFinder output from all 47 species
AT5G49665	No alias	Zinc finger (C3HC4-type RING finger) family protein	0.04	OrthoFinder output from all 47 species
Adi_g016670	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g021972	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g07285	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g04456	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene46085.t1	Aspi01Gene46085	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.24G014600.1	Ceric.24G014600	not classified & original description: pacid=50629291...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000605.6	No alias	RNA biosynthesis.RNA polymerase II-dependent...	0.01	OrthoFinder output from all 47 species
Dde_g10790	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dde_g50945	No alias	not classified & original description: none	0.01	OrthoFinder output from all 47 species
Gb_01603	No alias	ubiquitin protein ligase (WAV3)	0.02	OrthoFinder output from all 47 species
LOC_Os03g04890.1	LOC_Os03g04890	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
LOC_Os04g01160.1	LOC_Os04g01160	ubiquitin protein ligase (WAV3)	0.02	OrthoFinder output from all 47 species
LOC_Os04g42980.1	LOC_Os04g42980	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
LOC_Os10g32740.1	LOC_Os10g32740	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
LOC_Os12g24390.1	LOC_Os12g24390	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Lfl_g05684	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_11225g0010	No alias	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Msp_g24649	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g30259	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g17901	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005076	No alias	not classified & original description: CDS=439-2763	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007353	No alias	not classified & original description: CDS=1-2007	0.03	OrthoFinder output from all 47 species
Spa_g14647	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g53269	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e000344_P001	Zm00001e000344	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Zm00001e000345_P001	Zm00001e000345	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.01	OrthoFinder output from all 47 species
Zm00001e004620_P001	Zm00001e004620	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species
Zm00001e004621_P001	Zm00001e004621	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Zm00001e012729_P001	Zm00001e012729	E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006631	fatty acid metabolic process	None	Extended
BP	GO:0006694	steroid biosynthetic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008202	steroid metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009062	fatty acid catabolic process	RCA	Interproscan
BP	GO:0009308	amine metabolic process	None	Extended
BP	GO:0009690	cytokinin metabolic process	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010817	regulation of hormone levels	None	Extended
BP	GO:0016042	lipid catabolic process	None	Extended
BP	GO:0016054	organic acid catabolic process	None	Extended
BP	GO:0016128	phytosteroid metabolic process	None	Extended
BP	GO:0016129	phytosteroid biosynthetic process	None	Extended
BP	GO:0016131	brassinosteroid metabolic process	None	Extended
BP	GO:0016132	brassinosteroid biosynthetic process	RCA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032787	monocarboxylic acid metabolic process	None	Extended
BP	GO:0042445	hormone metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044242	cellular lipid catabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0046395	carboxylic acid catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072329	monocarboxylic acid catabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901615	organic hydroxy compound metabolic process	None	Extended
BP	GO:1901617	organic hydroxy compound biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0004386	helicase activity	IEP	HCCA
CC	GO:0005834	heterotrimeric G-protein complex	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0007389	pattern specification process	IEP	HCCA
MF	GO:0008324	monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0009411	response to UV	IEP	HCCA
MF	GO:0009672	auxin:proton symporter activity	IEP	HCCA
BP	GO:0009741	response to brassinosteroid	IEP	HCCA
BP	GO:0009799	specification of symmetry	IEP	HCCA
BP	GO:0009812	flavonoid metabolic process	IEP	HCCA
BP	GO:0009813	flavonoid biosynthetic process	IEP	HCCA
BP	GO:0009855	determination of bilateral symmetry	IEP	HCCA
BP	GO:0009886	post-embryonic animal morphogenesis	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0009944	polarity specification of adaxial/abaxial axis	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010022	meristem determinacy	IEP	HCCA
BP	GO:0010073	meristem maintenance	IEP	HCCA
BP	GO:0010093	specification of floral organ identity	IEP	HCCA
BP	GO:0010254	nectary development	IEP	HCCA
BP	GO:0010260	obsolete animal organ senescence	IEP	HCCA
BP	GO:0010582	floral meristem determinacy	IEP	HCCA
MF	GO:0015075	monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015099	nickel cation transmembrane transporter activity	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015295	solute:proton symporter activity	IEP	HCCA
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	IEP	HCCA
BP	GO:0015675	nickel cation transport	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	HCCA
BP	GO:0033993	response to lipid	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048441	petal development	IEP	HCCA
BP	GO:0048443	stamen development	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048479	style development	IEP	HCCA
BP	GO:0048507	meristem development	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
BP	GO:0065001	specification of axis polarity	IEP	HCCA
MF	GO:0080161	auxin transmembrane transporter activity	IEP	HCCA
BP	GO:0090701	specification of plant organ identity	IEP	HCCA
CC	GO:0098797	plasma membrane protein complex	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
CC	GO:1905360	GTPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002035	VWF_A	302	424
IPR001841	Znf_RING	130	159

External Links

No external refs found!

AT2G22680

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation