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  5. AT2G22620

AT2G22620


Description : Rhamnogalacturonate lyase family protein


Gene families : OG0001248 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001248_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G22620
Cluster HCCA: Cluster_56

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00046p00191970 evm_27.TU.AmTr_v1... No description available 0.03 OrthoFinder output from all 47 species
Als_g48497 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.18G076800.1 Ceric.18G076800 not classified & original description: pacid=50622194... 0.03 OrthoFinder output from all 47 species
Gb_00786 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Gb_00787 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Len_g45652 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
MA_2550g0010 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp5g20220.1 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Mp7g11130.1 No alias no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Smo413798 No alias No description available 0.03 OrthoFinder output from all 47 species
Solyc04g076630.3.1 Solyc04g076630 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Solyc11g011270.1.1 Solyc11g011270 no hits & (original description: none) 0.01 OrthoFinder output from all 47 species
Solyc11g011290.3.1 Solyc11g011290 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
MF GO:0016829 lyase activity ISS Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
BP GO:0001944 vasculature development IEP HCCA
MF GO:0004126 cytidine deaminase activity IEP HCCA
MF GO:0004620 phospholipase activity IEP HCCA
BP GO:0006213 pyrimidine nucleoside metabolic process IEP HCCA
BP GO:0006216 cytidine catabolic process IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006857 oligopeptide transport IEP HCCA
BP GO:0006904 vesicle docking involved in exocytosis IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009116 nucleoside metabolic process IEP HCCA
BP GO:0009119 ribonucleoside metabolic process IEP HCCA
BP GO:0009164 nucleoside catabolic process IEP HCCA
BP GO:0009972 cytidine deamination IEP HCCA
BP GO:0010119 regulation of stomatal movement IEP HCCA
BP GO:0010214 seed coat development IEP HCCA
MF GO:0010340 carboxyl-O-methyltransferase activity IEP HCCA
MF GO:0010341 gibberellin carboxyl-O-methyltransferase activity IEP HCCA
BP GO:0015833 peptide transport IEP HCCA
BP GO:0016128 phytosteroid metabolic process IEP HCCA
BP GO:0016129 phytosteroid biosynthetic process IEP HCCA
BP GO:0016131 brassinosteroid metabolic process IEP HCCA
BP GO:0016132 brassinosteroid biosynthetic process IEP HCCA
MF GO:0016207 4-coumarate-CoA ligase activity IEP HCCA
MF GO:0016405 CoA-ligase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016757 glycosyltransferase activity IEP HCCA
MF GO:0016758 hexosyltransferase activity IEP HCCA
MF GO:0016759 cellulose synthase activity IEP HCCA
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP HCCA
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP HCCA
MF GO:0016878 acid-thiol ligase activity IEP HCCA
MF GO:0019239 deaminase activity IEP HCCA
MF GO:0019825 oxygen binding IEP HCCA
BP GO:0022406 membrane docking IEP HCCA
CC GO:0031012 extracellular matrix IEP HCCA
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP HCCA
MF GO:0042409 caffeoyl-CoA O-methyltransferase activity IEP HCCA
BP GO:0042445 hormone metabolic process IEP HCCA
BP GO:0042454 ribonucleoside catabolic process IEP HCCA
BP GO:0042886 amide transport IEP HCCA
MF GO:0045735 nutrient reservoir activity IEP HCCA
BP GO:0046087 cytidine metabolic process IEP HCCA
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP HCCA
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP HCCA
BP GO:0046135 pyrimidine nucleoside catabolic process IEP HCCA
BP GO:0048278 vesicle docking IEP HCCA
BP GO:0072529 pyrimidine-containing compound catabolic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140029 exocytic process IEP HCCA
BP GO:0140056 organelle localization by membrane tethering IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901657 glycosyl compound metabolic process IEP HCCA
BP GO:1901658 glycosyl compound catabolic process IEP HCCA
InterPro domains Description Start Stop
IPR029413 RG-lyase_II 398 469
IPR010325 Rhamnogal_lyase 34 243
IPR029411 RG-lyase_III 483 671
No external refs found!