AT2G19950 (GC1)

Aliases : GC1

Description : golgin candidate 1

Gene families : OG0005613 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005613_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G19950

Target	Alias	Description	ECC score	Gene Family Method
Adi_g012571	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.03	OrthoFinder output from all 47 species
Ala_g08195	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.03	OrthoFinder output from all 47 species
Ceric.01G051800.1	GC1, Ceric.01G051800	Golgin-type membrane tethering protein *(GC1) & original...	0.03	OrthoFinder output from all 47 species
Cre12.g517500	GC1	No description available	0.02	OrthoFinder output from all 47 species
Ehy_g21464	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.02	OrthoFinder output from all 47 species
MA_110983g0010	GC1	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Ore_g36297	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.03	OrthoFinder output from all 47 species
Smo405724	GC1	Vesicle trafficking.target membrane tethering.Golgi...	0.03	OrthoFinder output from all 47 species
Solyc12g008390.3.1	GC1, Solyc12g008390	golgin (GC1)	0.04	OrthoFinder output from all 47 species
Tin_g01154	GC1	Golgin-type membrane tethering protein *(GC1) & original...	0.02	OrthoFinder output from all 47 species
Zm00001e019844_P001	GC1, Zm00001e019844	golgin (GC1)	0.05	OrthoFinder output from all 47 species
Zm00001e029063_P003	GC1, Zm00001e029063	golgin (GC1)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	RCA	Interproscan
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005794	Golgi apparatus	IDA	Interproscan
CC	GO:0005794	Golgi apparatus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006401	RNA catabolic process	None	Extended
BP	GO:0006402	mRNA catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004105	choline-phosphate cytidylyltransferase activity	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006644	phospholipid metabolic process	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006656	phosphatidylcholine biosynthetic process	IEP	HCCA
BP	GO:0008284	positive regulation of cell population proliferation	IEP	HCCA
BP	GO:0008654	phospholipid biosynthetic process	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
CC	GO:0031307	obsolete integral component of mitochondrial outer membrane	IEP	HCCA
BP	GO:0042127	regulation of cell population proliferation	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046470	phosphatidylcholine metabolic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
MF	GO:0070567	cytidylyltransferase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019177	Golgin_subfamily_A_member_5	460	683

External Links

No external refs found!

AT2G19950 (GC1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation