Aliases : EMB2296
Description : Ribosomal protein L2 family
Gene families : OG0001846 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001846_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00029p00109050 | evm_27.TU.AmTr_v1... | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.12 | OrthoFinder output from all 47 species | |
Adi_g047038 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
Adi_g086062 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Adi_g113531 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Aev_g02982 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g12035 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.11 | OrthoFinder output from all 47 species | |
Als_g27868 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Als_g43864 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Als_g63414 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g12168 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.19 | OrthoFinder output from all 47 species | |
Aspi01Gene06611.t1 | Aspi01Gene06611 | component *(uL2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Aspi01Gene42112.t1 | Aspi01Gene42112 | component *(uL2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Cba_g37121 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Ceric.01G015000.1 | Ceric.01G015000 | component *(uL2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.30G024600.1 | Ceric.30G024600 | component *(uL2) of large ribosomal-subunit (LSU)... | 0.09 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00020965.22 | EMB2296 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.21 | OrthoFinder output from all 47 species | |
Cre12.g535851 | EMB2296 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.23 | OrthoFinder output from all 47 species | |
Dac_g02131 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.16 | OrthoFinder output from all 47 species | |
Dcu_g05184 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.08 | OrthoFinder output from all 47 species | |
Ehy_g28944 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01014552001 | No alias | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.17 | OrthoFinder output from all 47 species | |
LOC_Os12g38000.1 | LOC_Os12g38000 | component RPL8 of LSU proteome component | 0.2 | OrthoFinder output from all 47 species | |
Len_g27953 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
MA_10431163g0010 | No alias | component RPL8 of LSU proteome component | 0.06 | OrthoFinder output from all 47 species | |
MA_219740g0010 | No alias | component RPL8 of LSU proteome component | 0.03 | OrthoFinder output from all 47 species | |
Mp7g01860.1 | EMB2296 | component RPL8 of LSU proteome component | 0.25 | OrthoFinder output from all 47 species | |
Mp7g08730.1 | EMB2296 | component RPL8 of LSU proteome component | 0.26 | OrthoFinder output from all 47 species | |
Msp_g07633 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.13 | OrthoFinder output from all 47 species | |
Nbi_g25715 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.11 | OrthoFinder output from all 47 species | |
Ore_g18846 | EMB2296 | component *(uL2) of large ribosomal-subunit (LSU)... | 0.06 | OrthoFinder output from all 47 species | |
Ore_g18847 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.04 | OrthoFinder output from all 47 species | |
Ore_g44030 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.03 | OrthoFinder output from all 47 species | |
Pir_g12813 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.02 | OrthoFinder output from all 47 species | |
Pp3c12_10200V3.1 | EMB2296, Pp3c12_10200 | Ribosomal protein L2 family | 0.17 | OrthoFinder output from all 47 species | |
Pp3c13_23630V3.1 | EMB2296, Pp3c13_23630 | Ribosomal protein L2 family | 0.11 | OrthoFinder output from all 47 species | |
Pp3c4_12690V3.1 | EMB2296, Pp3c4_12690 | Ribosomal protein L2 family | 0.15 | OrthoFinder output from all 47 species | |
Pp3c4_12720V3.1 | EMB2296, Pp3c4_12720 | Ribosomal protein L2 family | 0.15 | OrthoFinder output from all 47 species | |
Ppi_g33659 | EMB2296 | component *(uL2) of large ribosomal-subunit (LSU)... | 0.07 | OrthoFinder output from all 47 species | |
Ppi_g60464 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g13695 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.1 | OrthoFinder output from all 47 species | |
Sam_g13696 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.11 | OrthoFinder output from all 47 species | |
Smo170971 | EMB2296 | Protein biosynthesis.cytosolic ribosome.large subunit... | 0.11 | OrthoFinder output from all 47 species | |
Solyc07g063890.2.1 | Solyc07g063890 | component RPL8 of LSU proteome component | 0.25 | OrthoFinder output from all 47 species | |
Solyc12g005330.2.1 | Solyc12g005330 | component RPL8 of LSU proteome component | 0.28 | OrthoFinder output from all 47 species | |
Spa_g30832 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.18 | OrthoFinder output from all 47 species | |
Spa_g39107 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.16 | OrthoFinder output from all 47 species | |
Spa_g52209 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.17 | OrthoFinder output from all 47 species | |
Tin_g00494 | No alias | component *(uL2) of large ribosomal-subunit (LSU)... | 0.12 | OrthoFinder output from all 47 species | |
Zm00001e002931_P001 | EMB2296, Zm00001e002931 | component RPL8 of LSU proteome component | 0.28 | OrthoFinder output from all 47 species | |
Zm00001e018178_P001 | EMB2296, Zm00001e018178 | component RPL8 of LSU proteome component | 0.2 | OrthoFinder output from all 47 species | |
Zm00001e033350_P001 | EMB2296, Zm00001e033350 | component RPL8 of LSU proteome component | 0.27 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | ISS | Interproscan |
MF | GO:0005515 | protein binding | IPI | Interproscan |
CC | GO:0005730 | nucleolus | IDA | Interproscan |
CC | GO:0005737 | cytoplasm | ISM | Interproscan |
CC | GO:0005773 | vacuole | IDA | Interproscan |
CC | GO:0005774 | vacuolar membrane | IDA | Interproscan |
CC | GO:0005829 | cytosol | IDA | Interproscan |
CC | GO:0005840 | ribosome | ISS | Interproscan |
CC | GO:0005886 | plasma membrane | IDA | Interproscan |
BP | GO:0006412 | translation | ISS | Interproscan |
CC | GO:0009507 | chloroplast | IDA | Interproscan |
BP | GO:0009793 | embryo development ending in seed dormancy | NAS | Interproscan |
CC | GO:0022625 | cytosolic large ribosomal subunit | IDA | Interproscan |
CC | GO:0022626 | cytosolic ribosome | IDA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000028 | ribosomal small subunit assembly | IEP | HCCA |
BP | GO:0000447 | endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
BP | GO:0000461 | endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
BP | GO:0000462 | maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
BP | GO:0000469 | cleavage involved in rRNA processing | IEP | HCCA |
BP | GO:0000478 | endonucleolytic cleavage involved in rRNA processing | IEP | HCCA |
BP | GO:0000479 | endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) | IEP | HCCA |
BP | GO:0001510 | RNA methylation | IEP | HCCA |
MF | GO:0003727 | single-stranded RNA binding | IEP | HCCA |
MF | GO:0003746 | translation elongation factor activity | IEP | HCCA |
CC | GO:0005618 | cell wall | IEP | HCCA |
CC | GO:0005654 | nucleoplasm | IEP | HCCA |
CC | GO:0005732 | sno(s)RNA-containing ribonucleoprotein complex | IEP | HCCA |
CC | GO:0005834 | heterotrimeric G-protein complex | IEP | HCCA |
CC | GO:0005911 | cell-cell junction | IEP | HCCA |
BP | GO:0006090 | pyruvate metabolic process | IEP | HCCA |
BP | GO:0006091 | generation of precursor metabolites and energy | IEP | HCCA |
BP | GO:0006096 | glycolytic process | IEP | HCCA |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
BP | GO:0006163 | purine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006165 | nucleoside diphosphate phosphorylation | IEP | HCCA |
BP | GO:0006220 | pyrimidine nucleotide metabolic process | IEP | HCCA |
BP | GO:0006221 | pyrimidine nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0006364 | rRNA processing | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006405 | RNA export from nucleus | IEP | HCCA |
BP | GO:0006407 | rRNA export from nucleus | IEP | HCCA |
BP | GO:0006414 | translational elongation | IEP | HCCA |
BP | GO:0006417 | regulation of translation | IEP | HCCA |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | HCCA |
BP | GO:0006757 | ATP generation from ADP | IEP | HCCA |
BP | GO:0006793 | phosphorus metabolic process | IEP | HCCA |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | HCCA |
BP | GO:0006970 | response to osmotic stress | IEP | HCCA |
MF | GO:0008143 | poly(A) binding | IEP | HCCA |
BP | GO:0009117 | nucleotide metabolic process | IEP | HCCA |
BP | GO:0009132 | nucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009135 | purine nucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009141 | nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009144 | purine nucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009150 | purine ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009165 | nucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009179 | purine ribonucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009185 | ribonucleoside diphosphate metabolic process | IEP | HCCA |
BP | GO:0009199 | ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009205 | purine ribonucleoside triphosphate metabolic process | IEP | HCCA |
BP | GO:0009218 | pyrimidine ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009220 | pyrimidine ribonucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009260 | ribonucleotide biosynthetic process | IEP | HCCA |
BP | GO:0009451 | RNA modification | IEP | HCCA |
CC | GO:0009506 | plasmodesma | IEP | HCCA |
BP | GO:0009651 | response to salt stress | IEP | HCCA |
BP | GO:0009664 | plant-type cell wall organization | IEP | HCCA |
BP | GO:0009719 | response to endogenous stimulus | IEP | HCCA |
BP | GO:0009725 | response to hormone | IEP | HCCA |
BP | GO:0009735 | response to cytokinin | IEP | HCCA |
BP | GO:0010035 | response to inorganic substance | IEP | HCCA |
BP | GO:0010038 | response to metal ion | IEP | HCCA |
BP | GO:0010043 | response to zinc ion | IEP | HCCA |
BP | GO:0010476 | gibberellin mediated signaling pathway | IEP | HCCA |
CC | GO:0015030 | Cajal body | IEP | HCCA |
CC | GO:0015935 | small ribosomal subunit | IEP | HCCA |
BP | GO:0016043 | cellular component organization | IEP | HCCA |
BP | GO:0016052 | carbohydrate catabolic process | IEP | HCCA |
BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
BP | GO:0016072 | rRNA metabolic process | IEP | HCCA |
CC | GO:0016604 | nuclear body | IEP | HCCA |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | HCCA |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | HCCA |
BP | GO:0019637 | organophosphate metabolic process | IEP | HCCA |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
BP | GO:0022613 | ribonucleoprotein complex biogenesis | IEP | HCCA |
BP | GO:0022618 | ribonucleoprotein complex assembly | IEP | HCCA |
CC | GO:0022627 | cytosolic small ribosomal subunit | IEP | HCCA |
CC | GO:0030054 | cell junction | IEP | HCCA |
CC | GO:0030312 | external encapsulating structure | IEP | HCCA |
BP | GO:0030490 | maturation of SSU-rRNA | IEP | HCCA |
CC | GO:0030684 | preribosome | IEP | HCCA |
CC | GO:0030686 | 90S preribosome | IEP | HCCA |
BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
BP | GO:0031125 | rRNA 3'-end processing | IEP | HCCA |
BP | GO:0032259 | methylation | IEP | HCCA |
BP | GO:0032870 | cellular response to hormone stimulus | IEP | HCCA |
BP | GO:0034248 | regulation of amide metabolic process | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
BP | GO:0042254 | ribosome biogenesis | IEP | HCCA |
BP | GO:0042255 | ribosome assembly | IEP | HCCA |
BP | GO:0042256 | cytosolic ribosome assembly | IEP | HCCA |
BP | GO:0042545 | cell wall modification | IEP | HCCA |
BP | GO:0043412 | macromolecule modification | IEP | HCCA |
BP | GO:0043414 | macromolecule methylation | IEP | HCCA |
BP | GO:0043628 | regulatory ncRNA 3'-end processing | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0044281 | small molecule metabolic process | IEP | HCCA |
BP | GO:0045229 | external encapsulating structure organization | IEP | HCCA |
BP | GO:0046031 | ADP metabolic process | IEP | HCCA |
BP | GO:0046034 | ATP metabolic process | IEP | HCCA |
BP | GO:0046390 | ribose phosphate biosynthetic process | IEP | HCCA |
BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
BP | GO:0046686 | response to cadmium ion | IEP | HCCA |
BP | GO:0046939 | nucleotide phosphorylation | IEP | HCCA |
BP | GO:0050657 | nucleic acid transport | IEP | HCCA |
BP | GO:0050658 | RNA transport | IEP | HCCA |
BP | GO:0051029 | rRNA transport | IEP | HCCA |
BP | GO:0051168 | nuclear export | IEP | HCCA |
BP | GO:0051236 | establishment of RNA localization | IEP | HCCA |
BP | GO:0055086 | nucleobase-containing small molecule metabolic process | IEP | HCCA |
CC | GO:0070161 | anchoring junction | IEP | HCCA |
MF | GO:0070717 | poly-purine tract binding | IEP | HCCA |
BP | GO:0070925 | organelle assembly | IEP | HCCA |
BP | GO:0071215 | cellular response to abscisic acid stimulus | IEP | HCCA |
BP | GO:0071310 | cellular response to organic substance | IEP | HCCA |
BP | GO:0071396 | cellular response to lipid | IEP | HCCA |
BP | GO:0071495 | cellular response to endogenous stimulus | IEP | HCCA |
BP | GO:0071554 | cell wall organization or biogenesis | IEP | HCCA |
BP | GO:0071555 | cell wall organization | IEP | HCCA |
BP | GO:0071669 | plant-type cell wall organization or biogenesis | IEP | HCCA |
BP | GO:0071826 | ribonucleoprotein complex subunit organization | IEP | HCCA |
BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
BP | GO:0072521 | purine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072527 | pyrimidine-containing compound metabolic process | IEP | HCCA |
BP | GO:0072528 | pyrimidine-containing compound biosynthetic process | IEP | HCCA |
BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
BP | GO:0090407 | organophosphate biosynthetic process | IEP | HCCA |
BP | GO:0090501 | RNA phosphodiester bond hydrolysis | IEP | HCCA |
BP | GO:0090502 | RNA phosphodiester bond hydrolysis, endonucleolytic | IEP | HCCA |
BP | GO:0097064 | ncRNA export from nucleus | IEP | HCCA |
BP | GO:0097306 | cellular response to alcohol | IEP | HCCA |
BP | GO:0140694 | non-membrane-bounded organelle assembly | IEP | HCCA |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | HCCA |
BP | GO:1901137 | carbohydrate derivative biosynthetic process | IEP | HCCA |
BP | GO:1901293 | nucleoside phosphate biosynthetic process | IEP | HCCA |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | HCCA |
CC | GO:1905360 | GTPase complex | IEP | HCCA |
BP | GO:2000112 | regulation of cellular macromolecule biosynthetic process | IEP | HCCA |
No external refs found! |