Aliases : MCM4
Description : Minichromosome maintenance (MCM2/3/5) family protein
Gene families : OG0001056 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001056_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AT2G16440 | |
Cluster | HCCA: Cluster_120 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00001p00128450 | MCM4,... | Cell cycle.interphase.DNA replication.preinitiation.MCM... | 0.06 | OrthoFinder output from all 47 species | |
AMTR_s00057p00030490 | MCM7, PRL,... | Cell cycle.interphase.DNA replication.preinitiation.MCM... | 0.04 | OrthoFinder output from all 47 species | |
Adi_g059401 | MCM9 | component *(MCM9) of MCM8-9 cell cycle auxiliary complex... | 0.02 | OrthoFinder output from all 47 species | |
Ala_g28206 | MCM7, PRL | component *(MCM7) of MCM replicative DNA helicase... | 0.03 | OrthoFinder output from all 47 species | |
Als_g07824 | MCM4 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Als_g07825 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.03 | OrthoFinder output from all 47 species | |
Aop_g09863 | MCM7, PRL | component *(MCM7) of MCM replicative DNA helicase... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g23244 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.08 | OrthoFinder output from all 47 species | |
Aspi01Gene22827.t1 | MCM4, Aspi01Gene22827 | component *(MCM4) of MCM replicative DNA helicase... | 0.05 | OrthoFinder output from all 47 species | |
Aspi01Gene25633.t1 | MCM4, Aspi01Gene25633 | component *(MCM4) of MCM replicative DNA helicase... | 0.06 | OrthoFinder output from all 47 species | |
Aspi01Gene25932.t1 | MCM7, PRL,... | component *(MCM7) of MCM replicative DNA helicase... | 0.08 | OrthoFinder output from all 47 species | |
Azfi_s0206.g057809 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.04 | OrthoFinder output from all 47 species | |
Azfi_s0544.g076399 | MCM7, PRL | component *(MCM7) of MCM replicative DNA helicase... | 0.06 | OrthoFinder output from all 47 species | |
Ceric.04G002100.1 | MCM7, PRL,... | component *(MCM7) of MCM replicative DNA helicase... | 0.09 | OrthoFinder output from all 47 species | |
Ceric.10G009500.1 | MCM4, Ceric.10G009500 | component *(MCM4) of MCM replicative DNA helicase... | 0.12 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000144.164 | MCM4 | Cell cycle.interphase.DNA replication.preinitiation.MCM... | 0.04 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000241.38 | MCM7, PRL | Cell cycle.interphase.DNA replication.preinitiation.MCM... | 0.06 | OrthoFinder output from all 47 species | |
Cre07.g316850 | MCM4 | Cell cycle.interphase.DNA replication.preinitiation.MCM... | 0.09 | OrthoFinder output from all 47 species | |
Cre10.g455850 | MCM7, PRL | Cell cycle.interphase.DNA replication.preinitiation.MCM... | 0.04 | OrthoFinder output from all 47 species | |
Cre12.g540927 | MCM9 | Probable DNA helicase MCM9 OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
Dac_g06469 | MCM7, PRL | component *(MCM7) of MCM replicative DNA helicase... | 0.06 | OrthoFinder output from all 47 species | |
Dac_g14939 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.04 | OrthoFinder output from all 47 species | |
Dac_g15991 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g05722 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.05 | OrthoFinder output from all 47 species | |
Dcu_g40402 | MCM7, PRL | component *(MCM7) of MCM replicative DNA helicase... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01024207001 | MCM4 | Cell cycle.interphase.DNA replication.preinitiation.MCM... | 0.14 | OrthoFinder output from all 47 species | |
GSVIVT01028118001 | MCM7, PRL | Cell cycle.interphase.DNA replication.preinitiation.MCM... | 0.14 | OrthoFinder output from all 47 species | |
Gb_09191 | MCM4 | component MCM4 of MCM replicative DNA helicase complex | 0.08 | OrthoFinder output from all 47 species | |
Gb_35205 | MCM7, PRL | component MCM7 of MCM replicative DNA helicase complex | 0.09 | OrthoFinder output from all 47 species | |
Gb_36024 | MCM4 | component MCM4 of MCM replicative DNA helicase complex | 0.09 | OrthoFinder output from all 47 species | |
LOC_Os01g36390.1 | MCM4, LOC_Os01g36390 | component MCM4 of MCM replicative DNA helicase complex | 0.1 | OrthoFinder output from all 47 species | |
LOC_Os12g37400.1 | MCM7, PRL, LOC_Os12g37400 | component MCM7 of MCM replicative DNA helicase complex | 0.08 | OrthoFinder output from all 47 species | |
Len_g00736 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.06 | OrthoFinder output from all 47 species | |
Lfl_g19272 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g39364 | MCM7, PRL | component *(MCM7) of MCM replicative DNA helicase... | 0.03 | OrthoFinder output from all 47 species | |
MA_10426237g0010 | MCM7, PRL | component MCM7 of MCM replicative DNA helicase complex | 0.09 | OrthoFinder output from all 47 species | |
MA_10434231g0010 | MCM4 | DNA replication licensing factor MCM4 OS=Oryza sativa... | 0.09 | OrthoFinder output from all 47 species | |
Mp2g02600.1 | MCM7, PRL | component MCM7 of MCM replicative DNA helicase complex | 0.09 | OrthoFinder output from all 47 species | |
Mp3g02380.1 | MCM4 | component MCM4 of MCM replicative DNA helicase complex | 0.07 | OrthoFinder output from all 47 species | |
Mp4g02430.1 | MCM9 | component MCM9 of MCM8-9 cell cycle auxiliary complex | 0.06 | OrthoFinder output from all 47 species | |
Msp_g06139 | MCM7, PRL | component *(MCM7) of MCM replicative DNA helicase... | 0.07 | OrthoFinder output from all 47 species | |
Msp_g09222 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.07 | OrthoFinder output from all 47 species | |
Nbi_g03098 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.03 | OrthoFinder output from all 47 species | |
Nbi_g04377 | MCM7, PRL | component *(MCM7) of MCM replicative DNA helicase... | 0.04 | OrthoFinder output from all 47 species | |
Ppi_g01337 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.06 | OrthoFinder output from all 47 species | |
Ppi_g25980 | MCM7, PRL | component *(MCM7) of MCM replicative DNA helicase... | 0.06 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0298.g027193 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.07 | OrthoFinder output from all 47 species | |
Sam_g06717 | No alias | component *(MCM4) of MCM replicative DNA helicase... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g09734 | No alias | component *(MCM7) of MCM replicative DNA helicase... | 0.05 | OrthoFinder output from all 47 species | |
Sam_g27151 | No alias | component *(MCM7) of MCM replicative DNA helicase... | 0.06 | OrthoFinder output from all 47 species | |
Smo163959 | MCM7, PRL | Cell cycle.interphase.DNA replication.preinitiation.MCM... | 0.04 | OrthoFinder output from all 47 species | |
Solyc01g079500.4.1 | MCM7, PRL, Solyc01g079500 | component MCM7 of MCM replicative DNA helicase complex | 0.07 | OrthoFinder output from all 47 species | |
Solyc01g105520.3.1 | MCM9, Solyc01g105520 | component MCM9 of MCM8-9 cell cycle auxiliary complex | 0.04 | OrthoFinder output from all 47 species | |
Solyc01g110130.3.1 | MCM4, Solyc01g110130 | component MCM4 of MCM replicative DNA helicase complex | 0.06 | OrthoFinder output from all 47 species | |
Spa_g10751 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.05 | OrthoFinder output from all 47 species | |
Spa_g11927 | MCM7, PRL | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Spa_g11928 | MCM7, PRL | component *(MCM7) of MCM replicative DNA helicase... | 0.03 | OrthoFinder output from all 47 species | |
Tin_g06082 | MCM7, PRL | component *(MCM7) of MCM replicative DNA helicase... | 0.09 | OrthoFinder output from all 47 species | |
Tin_g12164 | MCM4 | component *(MCM4) of MCM replicative DNA helicase... | 0.06 | OrthoFinder output from all 47 species | |
Zm00001e002873_P001 | MCM7, PRL, Zm00001e002873 | component MCM7 of MCM replicative DNA helicase complex | 0.13 | OrthoFinder output from all 47 species | |
Zm00001e018214_P001 | MCM7, PRL, Zm00001e018214 | component MCM7 of MCM replicative DNA helicase complex | 0.12 | OrthoFinder output from all 47 species | |
Zm00001e026379_P001 | MCM4, Zm00001e026379 | component MCM4 of MCM replicative DNA helicase complex | 0.13 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000280 | nuclear division | RCA | Interproscan |
BP | GO:0000911 | cytokinesis by cell plate formation | RCA | Interproscan |
MF | GO:0003677 | DNA binding | ISS | Interproscan |
MF | GO:0005524 | ATP binding | ISS | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
CC | GO:0005829 | cytosol | IDA | Interproscan |
BP | GO:0006260 | DNA replication | RCA | Interproscan |
BP | GO:0006261 | DNA-templated DNA replication | RCA | Interproscan |
BP | GO:0006268 | DNA unwinding involved in DNA replication | TAS | Interproscan |
BP | GO:0006270 | DNA replication initiation | ISS | Interproscan |
BP | GO:0006270 | DNA replication initiation | RCA | Interproscan |
BP | GO:0006275 | regulation of DNA replication | RCA | Interproscan |
BP | GO:0006306 | DNA methylation | RCA | Interproscan |
BP | GO:0007000 | nucleolus organization | RCA | Interproscan |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | ISS | Interproscan |
BP | GO:0008283 | cell population proliferation | IEP | Interproscan |
BP | GO:0008283 | cell population proliferation | RCA | Interproscan |
BP | GO:0009165 | nucleotide biosynthetic process | RCA | Interproscan |
BP | GO:0009909 | regulation of flower development | RCA | Interproscan |
BP | GO:0034968 | histone lysine methylation | RCA | Interproscan |
BP | GO:0051567 | histone H3-K9 methylation | RCA | Interproscan |
BP | GO:0051726 | regulation of cell cycle | RCA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000003 | reproduction | IEP | HCCA |
CC | GO:0000228 | nuclear chromosome | IEP | HCCA |
BP | GO:0000278 | mitotic cell cycle | IEP | HCCA |
BP | GO:0000710 | meiotic mismatch repair | IEP | HCCA |
BP | GO:0000723 | telomere maintenance | IEP | HCCA |
BP | GO:0000724 | double-strand break repair via homologous recombination | IEP | HCCA |
BP | GO:0000725 | recombinational repair | IEP | HCCA |
CC | GO:0000793 | condensed chromosome | IEP | HCCA |
CC | GO:0000794 | condensed nuclear chromosome | IEP | HCCA |
CC | GO:0000795 | synaptonemal complex | IEP | HCCA |
MF | GO:0003684 | damaged DNA binding | IEP | HCCA |
MF | GO:0003690 | double-stranded DNA binding | IEP | HCCA |
MF | GO:0003779 | actin binding | IEP | HCCA |
MF | GO:0003887 | DNA-directed DNA polymerase activity | IEP | HCCA |
MF | GO:0003896 | DNA primase activity | IEP | HCCA |
MF | GO:0003899 | DNA-directed 5'-3' RNA polymerase activity | IEP | HCCA |
MF | GO:0004407 | histone deacetylase activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
CC | GO:0005694 | chromosome | IEP | HCCA |
CC | GO:0005847 | mRNA cleavage and polyadenylation specificity factor complex | IEP | HCCA |
CC | GO:0005849 | mRNA cleavage factor complex | IEP | HCCA |
CC | GO:0005884 | actin filament | IEP | HCCA |
CC | GO:0005911 | cell-cell junction | IEP | HCCA |
BP | GO:0006084 | acetyl-CoA metabolic process | IEP | HCCA |
BP | GO:0006281 | DNA repair | IEP | HCCA |
BP | GO:0006298 | mismatch repair | IEP | HCCA |
BP | GO:0006301 | postreplication repair | IEP | HCCA |
BP | GO:0006302 | double-strand break repair | IEP | HCCA |
BP | GO:0006310 | DNA recombination | IEP | HCCA |
BP | GO:0006312 | mitotic recombination | IEP | HCCA |
BP | GO:0006378 | mRNA polyadenylation | IEP | HCCA |
BP | GO:0006637 | acyl-CoA metabolic process | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
BP | GO:0007049 | cell cycle | IEP | HCCA |
BP | GO:0007062 | sister chromatid cohesion | IEP | HCCA |
BP | GO:0007129 | homologous chromosome pairing at meiosis | IEP | HCCA |
BP | GO:0007140 | male meiotic nuclear division | IEP | HCCA |
BP | GO:0007143 | female meiotic nuclear division | IEP | HCCA |
BP | GO:0007346 | regulation of mitotic cell cycle | IEP | HCCA |
BP | GO:0007389 | pattern specification process | IEP | HCCA |
MF | GO:0008092 | cytoskeletal protein binding | IEP | HCCA |
CC | GO:0008622 | epsilon DNA polymerase complex | IEP | HCCA |
BP | GO:0009259 | ribonucleotide metabolic process | IEP | HCCA |
BP | GO:0009292 | horizontal gene transfer | IEP | HCCA |
BP | GO:0009294 | DNA-mediated transformation | IEP | HCCA |
CC | GO:0009506 | plasmodesma | IEP | HCCA |
BP | GO:0009555 | pollen development | IEP | HCCA |
BP | GO:0009799 | specification of symmetry | IEP | HCCA |
BP | GO:0009855 | determination of bilateral symmetry | IEP | HCCA |
BP | GO:0009892 | negative regulation of metabolic process | IEP | HCCA |
BP | GO:0009944 | polarity specification of adaxial/abaxial axis | IEP | HCCA |
BP | GO:0010014 | meristem initiation | IEP | HCCA |
BP | GO:0010073 | meristem maintenance | IEP | HCCA |
BP | GO:0010087 | phloem or xylem histogenesis | IEP | HCCA |
BP | GO:0010089 | xylem development | IEP | HCCA |
BP | GO:0010212 | response to ionizing radiation | IEP | HCCA |
BP | GO:0010332 | response to gamma radiation | IEP | HCCA |
BP | GO:0010389 | regulation of G2/M transition of mitotic cell cycle | IEP | HCCA |
BP | GO:0010564 | regulation of cell cycle process | IEP | HCCA |
BP | GO:0010605 | negative regulation of macromolecule metabolic process | IEP | HCCA |
BP | GO:0010629 | negative regulation of gene expression | IEP | HCCA |
BP | GO:0016444 | somatic cell DNA recombination | IEP | HCCA |
BP | GO:0016458 | obsolete gene silencing | IEP | HCCA |
MF | GO:0016772 | transferase activity, transferring phosphorus-containing groups | IEP | HCCA |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | HCCA |
MF | GO:0016810 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds | IEP | HCCA |
MF | GO:0016811 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides | IEP | HCCA |
MF | GO:0019213 | deacetylase activity | IEP | HCCA |
BP | GO:0019693 | ribose phosphate metabolic process | IEP | HCCA |
CC | GO:0030054 | cell junction | IEP | HCCA |
CC | GO:0030894 | replisome | IEP | HCCA |
MF | GO:0030983 | mismatched DNA binding | IEP | HCCA |
BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
BP | GO:0031124 | mRNA 3'-end processing | IEP | HCCA |
BP | GO:0032200 | telomere organization | IEP | HCCA |
BP | GO:0032204 | regulation of telomere maintenance | IEP | HCCA |
CC | GO:0032300 | mismatch repair complex | IEP | HCCA |
BP | GO:0032501 | multicellular organismal process | IEP | HCCA |
BP | GO:0032502 | developmental process | IEP | HCCA |
BP | GO:0032504 | multicellular organism reproduction | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
CC | GO:0032993 | protein-DNA complex | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
MF | GO:0033558 | protein lysine deacetylase activity | IEP | HCCA |
BP | GO:0033865 | nucleoside bisphosphate metabolic process | IEP | HCCA |
BP | GO:0033875 | ribonucleoside bisphosphate metabolic process | IEP | HCCA |
BP | GO:0034032 | purine nucleoside bisphosphate metabolic process | IEP | HCCA |
MF | GO:0034061 | DNA polymerase activity | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0035383 | thioester metabolic process | IEP | HCCA |
BP | GO:0042023 | DNA endoreduplication | IEP | HCCA |
BP | GO:0042138 | meiotic DNA double-strand break formation | IEP | HCCA |
CC | GO:0042555 | MCM complex | IEP | HCCA |
CC | GO:0042575 | DNA polymerase complex | IEP | HCCA |
BP | GO:0043247 | telomere maintenance in response to DNA damage | IEP | HCCA |
CC | GO:0043601 | nuclear replisome | IEP | HCCA |
BP | GO:0043631 | RNA polyadenylation | IEP | HCCA |
BP | GO:0043687 | post-translational protein modification | IEP | HCCA |
BP | GO:0044786 | cell cycle DNA replication | IEP | HCCA |
MF | GO:0044877 | protein-containing complex binding | IEP | HCCA |
BP | GO:0045132 | meiotic chromosome segregation | IEP | HCCA |
BP | GO:0045143 | homologous chromosome segregation | IEP | HCCA |
BP | GO:0045787 | positive regulation of cell cycle | IEP | HCCA |
BP | GO:0048229 | gametophyte development | IEP | HCCA |
BP | GO:0048519 | negative regulation of biological process | IEP | HCCA |
BP | GO:0048522 | positive regulation of cellular process | IEP | HCCA |
BP | GO:0048856 | anatomical structure development | IEP | HCCA |
MF | GO:0051015 | actin filament binding | IEP | HCCA |
BP | GO:0051026 | chiasma assembly | IEP | HCCA |
BP | GO:0051302 | regulation of cell division | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
CC | GO:0061695 | transferase complex, transferring phosphorus-containing groups | IEP | HCCA |
BP | GO:0061982 | meiosis I cell cycle process | IEP | HCCA |
BP | GO:0065001 | specification of axis polarity | IEP | HCCA |
CC | GO:0070161 | anchoring junction | IEP | HCCA |
BP | GO:0070192 | chromosome organization involved in meiotic cell cycle | IEP | HCCA |
BP | GO:0090305 | nucleic acid phosphodiester bond hydrolysis | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
BP | GO:0098813 | nuclear chromosome segregation | IEP | HCCA |
CC | GO:0099080 | supramolecular complex | IEP | HCCA |
CC | GO:0099081 | supramolecular polymer | IEP | HCCA |
CC | GO:0099086 | synaptonemal structure | IEP | HCCA |
CC | GO:0099512 | supramolecular fiber | IEP | HCCA |
CC | GO:0099513 | polymeric cytoskeletal fiber | IEP | HCCA |
BP | GO:0140013 | meiotic nuclear division | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
BP | GO:1901987 | regulation of cell cycle phase transition | IEP | HCCA |
BP | GO:1901990 | regulation of mitotic cell cycle phase transition | IEP | HCCA |
BP | GO:1902749 | regulation of cell cycle G2/M phase transition | IEP | HCCA |
BP | GO:1903046 | meiotic cell cycle process | IEP | HCCA |
No external refs found! |