AT2G16440 (MCM4)


Aliases : MCM4

Description : Minichromosome maintenance (MCM2/3/5) family protein


Gene families : OG0001056 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001056_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G16440
Cluster HCCA: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00128450 MCM4,... Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.06 OrthoFinder output from all 47 species
AMTR_s00057p00030490 MCM7, PRL,... Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.04 OrthoFinder output from all 47 species
Adi_g059401 MCM9 component *(MCM9) of MCM8-9 cell cycle auxiliary complex... 0.02 OrthoFinder output from all 47 species
Ala_g28206 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Als_g07824 MCM4 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g07825 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Aop_g09863 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
Aop_g23244 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.08 OrthoFinder output from all 47 species
Aspi01Gene22827.t1 MCM4, Aspi01Gene22827 component *(MCM4) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Aspi01Gene25633.t1 MCM4, Aspi01Gene25633 component *(MCM4) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Aspi01Gene25932.t1 MCM7, PRL,... component *(MCM7) of MCM replicative DNA helicase... 0.08 OrthoFinder output from all 47 species
Azfi_s0206.g057809 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
Azfi_s0544.g076399 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Ceric.04G002100.1 MCM7, PRL,... component *(MCM7) of MCM replicative DNA helicase... 0.09 OrthoFinder output from all 47 species
Ceric.10G009500.1 MCM4, Ceric.10G009500 component *(MCM4) of MCM replicative DNA helicase... 0.12 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000144.164 MCM4 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000241.38 MCM7, PRL Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.06 OrthoFinder output from all 47 species
Cre07.g316850 MCM4 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.09 OrthoFinder output from all 47 species
Cre10.g455850 MCM7, PRL Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.04 OrthoFinder output from all 47 species
Cre12.g540927 MCM9 Probable DNA helicase MCM9 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Dac_g06469 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Dac_g14939 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
Dac_g15991 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
Dcu_g05722 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Dcu_g40402 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
GSVIVT01024207001 MCM4 Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.14 OrthoFinder output from all 47 species
GSVIVT01028118001 MCM7, PRL Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.14 OrthoFinder output from all 47 species
Gb_09191 MCM4 component MCM4 of MCM replicative DNA helicase complex 0.08 OrthoFinder output from all 47 species
Gb_35205 MCM7, PRL component MCM7 of MCM replicative DNA helicase complex 0.09 OrthoFinder output from all 47 species
Gb_36024 MCM4 component MCM4 of MCM replicative DNA helicase complex 0.09 OrthoFinder output from all 47 species
LOC_Os01g36390.1 MCM4, LOC_Os01g36390 component MCM4 of MCM replicative DNA helicase complex 0.1 OrthoFinder output from all 47 species
LOC_Os12g37400.1 MCM7, PRL, LOC_Os12g37400 component MCM7 of MCM replicative DNA helicase complex 0.08 OrthoFinder output from all 47 species
Len_g00736 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Lfl_g19272 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Lfl_g39364 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
MA_10426237g0010 MCM7, PRL component MCM7 of MCM replicative DNA helicase complex 0.09 OrthoFinder output from all 47 species
MA_10434231g0010 MCM4 DNA replication licensing factor MCM4 OS=Oryza sativa... 0.09 OrthoFinder output from all 47 species
Mp2g02600.1 MCM7, PRL component MCM7 of MCM replicative DNA helicase complex 0.09 OrthoFinder output from all 47 species
Mp3g02380.1 MCM4 component MCM4 of MCM replicative DNA helicase complex 0.07 OrthoFinder output from all 47 species
Mp4g02430.1 MCM9 component MCM9 of MCM8-9 cell cycle auxiliary complex 0.06 OrthoFinder output from all 47 species
Msp_g06139 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Msp_g09222 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Nbi_g03098 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Nbi_g04377 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.04 OrthoFinder output from all 47 species
Ppi_g01337 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Ppi_g25980 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0298.g027193 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.07 OrthoFinder output from all 47 species
Sam_g06717 No alias component *(MCM4) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Sam_g09734 No alias component *(MCM7) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Sam_g27151 No alias component *(MCM7) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Smo163959 MCM7, PRL Cell cycle.interphase.DNA replication.preinitiation.MCM... 0.04 OrthoFinder output from all 47 species
Solyc01g079500.4.1 MCM7, PRL, Solyc01g079500 component MCM7 of MCM replicative DNA helicase complex 0.07 OrthoFinder output from all 47 species
Solyc01g105520.3.1 MCM9, Solyc01g105520 component MCM9 of MCM8-9 cell cycle auxiliary complex 0.04 OrthoFinder output from all 47 species
Solyc01g110130.3.1 MCM4, Solyc01g110130 component MCM4 of MCM replicative DNA helicase complex 0.06 OrthoFinder output from all 47 species
Spa_g10751 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.05 OrthoFinder output from all 47 species
Spa_g11927 MCM7, PRL not classified & original description: none 0.04 OrthoFinder output from all 47 species
Spa_g11928 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.03 OrthoFinder output from all 47 species
Tin_g06082 MCM7, PRL component *(MCM7) of MCM replicative DNA helicase... 0.09 OrthoFinder output from all 47 species
Tin_g12164 MCM4 component *(MCM4) of MCM replicative DNA helicase... 0.06 OrthoFinder output from all 47 species
Zm00001e002873_P001 MCM7, PRL, Zm00001e002873 component MCM7 of MCM replicative DNA helicase complex 0.13 OrthoFinder output from all 47 species
Zm00001e018214_P001 MCM7, PRL, Zm00001e018214 component MCM7 of MCM replicative DNA helicase complex 0.12 OrthoFinder output from all 47 species
Zm00001e026379_P001 MCM4, Zm00001e026379 component MCM4 of MCM replicative DNA helicase complex 0.13 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0000280 nuclear division RCA Interproscan
BP GO:0000911 cytokinesis by cell plate formation RCA Interproscan
MF GO:0003677 DNA binding ISS Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006260 DNA replication RCA Interproscan
BP GO:0006261 DNA-templated DNA replication RCA Interproscan
BP GO:0006268 DNA unwinding involved in DNA replication TAS Interproscan
BP GO:0006270 DNA replication initiation ISS Interproscan
BP GO:0006270 DNA replication initiation RCA Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0007000 nucleolus organization RCA Interproscan
MF GO:0008094 ATP-dependent activity, acting on DNA ISS Interproscan
BP GO:0008283 cell population proliferation IEP Interproscan
BP GO:0008283 cell population proliferation RCA Interproscan
BP GO:0009165 nucleotide biosynthetic process RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0034968 histone lysine methylation RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
BP GO:0051726 regulation of cell cycle RCA Interproscan
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
CC GO:0000228 nuclear chromosome IEP HCCA
BP GO:0000278 mitotic cell cycle IEP HCCA
BP GO:0000710 meiotic mismatch repair IEP HCCA
BP GO:0000723 telomere maintenance IEP HCCA
BP GO:0000724 double-strand break repair via homologous recombination IEP HCCA
BP GO:0000725 recombinational repair IEP HCCA
CC GO:0000793 condensed chromosome IEP HCCA
CC GO:0000794 condensed nuclear chromosome IEP HCCA
CC GO:0000795 synaptonemal complex IEP HCCA
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003896 DNA primase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004407 histone deacetylase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
CC GO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
CC GO:0005884 actin filament IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006301 postreplication repair IEP HCCA
BP GO:0006302 double-strand break repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006312 mitotic recombination IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006637 acyl-CoA metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0007049 cell cycle IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007129 homologous chromosome pairing at meiosis IEP HCCA
BP GO:0007140 male meiotic nuclear division IEP HCCA
BP GO:0007143 female meiotic nuclear division IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0007389 pattern specification process IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
CC GO:0008622 epsilon DNA polymerase complex IEP HCCA
BP GO:0009259 ribonucleotide metabolic process IEP HCCA
BP GO:0009292 horizontal gene transfer IEP HCCA
BP GO:0009294 DNA-mediated transformation IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009799 specification of symmetry IEP HCCA
BP GO:0009855 determination of bilateral symmetry IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009944 polarity specification of adaxial/abaxial axis IEP HCCA
BP GO:0010014 meristem initiation IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010087 phloem or xylem histogenesis IEP HCCA
BP GO:0010089 xylem development IEP HCCA
BP GO:0010212 response to ionizing radiation IEP HCCA
BP GO:0010332 response to gamma radiation IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016444 somatic cell DNA recombination IEP HCCA
BP GO:0016458 obsolete gene silencing IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
MF GO:0019213 deacetylase activity IEP HCCA
BP GO:0019693 ribose phosphate metabolic process IEP HCCA
CC GO:0030054 cell junction IEP HCCA
CC GO:0030894 replisome IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0032200 telomere organization IEP HCCA
BP GO:0032204 regulation of telomere maintenance IEP HCCA
CC GO:0032300 mismatch repair complex IEP HCCA
BP GO:0032501 multicellular organismal process IEP HCCA
BP GO:0032502 developmental process IEP HCCA
BP GO:0032504 multicellular organism reproduction IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0033558 protein lysine deacetylase activity IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0035383 thioester metabolic process IEP HCCA
BP GO:0042023 DNA endoreduplication IEP HCCA
BP GO:0042138 meiotic DNA double-strand break formation IEP HCCA
CC GO:0042555 MCM complex IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
BP GO:0043247 telomere maintenance in response to DNA damage IEP HCCA
CC GO:0043601 nuclear replisome IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045143 homologous chromosome segregation IEP HCCA
BP GO:0045787 positive regulation of cell cycle IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
MF GO:0051015 actin filament binding IEP HCCA
BP GO:0051026 chiasma assembly IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0061982 meiosis I cell cycle process IEP HCCA
BP GO:0065001 specification of axis polarity IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP HCCA
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
CC GO:0099080 supramolecular complex IEP HCCA
CC GO:0099081 supramolecular polymer IEP HCCA
CC GO:0099086 synaptonemal structure IEP HCCA
CC GO:0099512 supramolecular fiber IEP HCCA
CC GO:0099513 polymeric cytoskeletal fiber IEP HCCA
BP GO:0140013 meiotic nuclear division IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR027925 MCM_N 135 222
IPR033762 MCM_OB 236 365
IPR001208 MCM_dom 423 645
No external refs found!