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  5. AT2G05720

AT2G05720


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG0003984 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003984_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G05720
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Tin_g09182 EMB2776, LIS component *(PRPF4) of spliceosomal U4/U6 snRNP &... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISS Interproscan
CC GO:0005737 cytoplasm ISM Interproscan
BP GO:0006863 purine nucleobase transport RCA Interproscan
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0000302 response to reactive oxygen species IEP HCCA
MF GO:0004372 glycine hydroxymethyltransferase activity IEP HCCA
MF GO:0004864 protein phosphatase inhibitor activity IEP HCCA
MF GO:0005496 steroid binding IEP HCCA
MF GO:0005516 calmodulin binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006493 protein O-linked glycosylation IEP HCCA
BP GO:0006563 L-serine metabolic process IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008142 oxysterol binding IEP HCCA
BP GO:0008356 asymmetric cell division IEP HCCA
BP GO:0009606 tropism IEP HCCA
BP GO:0009608 response to symbiont IEP HCCA
BP GO:0009610 response to symbiotic fungus IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009629 response to gravity IEP HCCA
BP GO:0009630 gravitropism IEP HCCA
BP GO:0009642 response to light intensity IEP HCCA
BP GO:0009644 response to high light intensity IEP HCCA
BP GO:0009653 anatomical structure morphogenesis IEP HCCA
BP GO:0009691 cytokinin biosynthetic process IEP HCCA
MF GO:0009824 AMP dimethylallyltransferase activity IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
CC GO:0009897 external side of plasma membrane IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010103 stomatal complex morphogenesis IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010628 positive regulation of gene expression IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
MF GO:0016742 hydroxymethyl-, formyl- and related transferase activity IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019212 phosphatase inhibitor activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
MF GO:0030551 cyclic nucleotide binding IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
MF GO:0032934 sterol binding IEP HCCA
BP GO:0034250 positive regulation of amide metabolic process IEP HCCA
BP GO:0042127 regulation of cell population proliferation IEP HCCA
BP GO:0042542 response to hydrogen peroxide IEP HCCA
CC GO:0042995 cell projection IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0045727 positive regulation of translation IEP HCCA
BP GO:0046482 para-aminobenzoic acid metabolic process IEP HCCA
BP GO:0048438 floral whorl development IEP HCCA
BP GO:0048467 gynoecium development IEP HCCA
BP GO:0048513 animal organ development IEP HCCA
BP GO:0048518 positive regulation of biological process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0050826 response to freezing IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
MF GO:0052622 ATP dimethylallyltransferase activity IEP HCCA
MF GO:0052623 ADP dimethylallyltransferase activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0062197 cellular response to chemical stress IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071470 cellular response to osmotic stress IEP HCCA
BP GO:0080163 regulation of protein serine/threonine phosphatase activity IEP HCCA
CC GO:0090406 pollen tube IEP HCCA
BP GO:0090626 plant epidermis morphogenesis IEP HCCA
BP GO:0090698 post-embryonic plant morphogenesis IEP HCCA
CC GO:0098552 side of membrane IEP HCCA
CC GO:0120025 plasma membrane bounded cell projection IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 205 243
IPR001680 WD40_repeat 164 200
No external refs found!