AT2G04025 (RGF3)

Aliases : RGF3

Description : root meristem growth factor 3 (RGF3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of root meristem growth, positive regulation of gene expression; LOCATED IN: endomembrane system; EXPRESSED IN: stem, root, carpel; EXPRESSED DURING: 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G13620.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).

Gene families : OG0025583 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0025583_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT2G04025
Cluster	HCCA: Cluster_77

Target	Alias	Description	ECC score	Gene Family Method	Actions
Zm00001e030494_P001	Zm00001e030494	RGF precursor polypeptide	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	ND	Interproscan
MF	GO:0005102	signaling receptor binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005615	extracellular space	ISS	Interproscan
MF	GO:0008083	growth factor activity	IDA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008284	positive regulation of cell population proliferation	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010075	regulation of meristem growth	None	Extended
BP	GO:0010082	regulation of root meristem growth	IGI	Interproscan
BP	GO:0030154	cell differentiation	IDA	Interproscan
MF	GO:0030545	signaling receptor regulator activity	None	Extended
MF	GO:0030546	signaling receptor activator activity	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042127	regulation of cell population proliferation	None	Extended
MF	GO:0048018	receptor ligand activity	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140677	molecular function activator activity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
BP	GO:0006826	iron ion transport	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
BP	GO:0010106	cellular response to iron ion starvation	IEP	HCCA
BP	GO:0010167	response to nitrate	IEP	HCCA
BP	GO:0015698	inorganic anion transport	IEP	HCCA
BP	GO:0015706	nitrate transmembrane transport	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0048364	root development	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
BP	GO:0048527	lateral root development	IEP	HCCA
BP	GO:0048528	post-embryonic root development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0090696	post-embryonic plant organ development	IEP	HCCA
BP	GO:0098660	inorganic ion transmembrane transport	IEP	HCCA
BP	GO:0098661	inorganic anion transmembrane transport	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1902025	nitrate import	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT2G04025 (RGF3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation