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  5. AT2G01390

AT2G01390


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0001104 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001104_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT2G01390

Target Alias Description ECC score Gene Family Method Actions
Adi_g023647 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g07294 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g10282 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g12238 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g14389 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g18254 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g02060 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g17323 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene03551.t1 Aspi01Gene03551 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Dac_g18551 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Dcu_g09922 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ehy_g01567 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g02893 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01019040001 No alias Pentatricopeptide repeat-containing protein At5g66631... 0.04 OrthoFinder output from all 47 species
Gb_11322 No alias Pentatricopeptide repeat-containing protein At2g01390... 0.04 OrthoFinder output from all 47 species
LOC_Os01g07340.1 LOC_Os01g07340 Pentatricopeptide repeat-containing protein At5g66631... 0.03 OrthoFinder output from all 47 species
Len_g03366 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Len_g59567 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g08385 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Pnu_g10079 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g10227 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0073.g017150 No alias not classified & original description: CDS=1-2094 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0102.g019915 No alias not classified & original description: CDS=1-2391 0.02 OrthoFinder output from all 47 species
Sam_g12526 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g27171 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc02g065510.1.1 Solyc02g065510 Pentatricopeptide repeat-containing protein At5g66631... 0.04 OrthoFinder output from all 47 species
Tin_g13511 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000959 mitochondrial RNA metabolic process IEP HCCA
BP GO:0001101 response to acid chemical IEP HCCA
BP GO:0009414 response to water deprivation IEP HCCA
BP GO:0009415 response to water IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016556 mRNA modification IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
BP GO:0080156 mitochondrial mRNA modification IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
BP GO:1900864 mitochondrial RNA modification IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 190 235
IPR002885 Pentatricopeptide_repeat 121 165
IPR002885 Pentatricopeptide_repeat 485 531
IPR002885 Pentatricopeptide_repeat 249 293
IPR002885 Pentatricopeptide_repeat 420 446
No external refs found!