AT1G80370 (CYCA2;4)

Aliases : CYCA2;4

Description : Cyclin A2;4

Gene families : OG0001097 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001097_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G80370
Cluster	HCCA: Cluster_31

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00272790	CYCA3;1,...	Cell cycle.regulation.cyclins.CYCA-type cyclin	0.05	OrthoFinder output from all 47 species
AMTR_s00068p00198800	CYCA1;1	Cell cycle.regulation.cyclins.CYCA-type cyclin	0.06	OrthoFinder output from all 47 species
AT1G47210	CYCA3;2	cyclin-dependent protein kinase 3;2	0.04	OrthoFinder output from all 47 species
AT5G11300	CYC3B, CYCA2;2, CYC2BAT	mitotic-like cyclin 3B from Arabidopsis	0.04	OrthoFinder output from all 47 species
AT5G43080	CYCA3;1	Cyclin A3;1	0.06	OrthoFinder output from all 47 species
Adi_g023459	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.02	OrthoFinder output from all 47 species
Adi_g032026	CYCA1;1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g16144	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.06	OrthoFinder output from all 47 species
Ala_g21059	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.03	OrthoFinder output from all 47 species
Ala_g23638	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.04	OrthoFinder output from all 47 species
Ala_g25625	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.04	OrthoFinder output from all 47 species
Als_g14283	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.04	OrthoFinder output from all 47 species
Aop_g01772	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.05	OrthoFinder output from all 47 species
Aop_g19060	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.05	OrthoFinder output from all 47 species
Aspi01Gene15105.t1	CYCA1;1, Aspi01Gene15105	regulatory protein *(TAM) involved in metaphase to...	0.05	OrthoFinder output from all 47 species
Aspi01Gene18499.t1	CYCA1;1, Aspi01Gene18499	regulatory protein *(TAM) involved in metaphase to...	0.05	OrthoFinder output from all 47 species
Azfi_s0003.g008079	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.08	OrthoFinder output from all 47 species
Azfi_s0006.g010440	CYCA1;1	not classified & original description: CDS=585-2150	0.05	OrthoFinder output from all 47 species
Azfi_s0022.g016140	CYCA1;1	not classified & original description: CDS=307-1776	0.06	OrthoFinder output from all 47 species
Azfi_s0051.g031411	CYCA1;1	not classified & original description: CDS=319-1644	0.05	OrthoFinder output from all 47 species
Ceric.26G030100.1	CYCA1;1, Ceric.26G030100	regulatory protein *(TAM) involved in metaphase to...	0.07	OrthoFinder output from all 47 species
Ceric.30G011000.1	CYCA1;1, Ceric.30G011000	regulatory protein *(TAM) involved in metaphase to...	0.09	OrthoFinder output from all 47 species
Ceric.33G050700.1	CYCA1;1, Ceric.33G050700	regulatory protein *(TAM) involved in metaphase to...	0.08	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000076.67	CYCA1;1	Cyclin-A2-1 OS=Oryza sativa subsp. japonica	0.02	OrthoFinder output from all 47 species
Cre03.g207900	CYCA1;1	Cell cycle.regulation.cyclins.CYCA-type cyclin	0.02	OrthoFinder output from all 47 species
Dac_g04219	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.04	OrthoFinder output from all 47 species
Dac_g11514	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.03	OrthoFinder output from all 47 species
Dac_g13212	CYCA1;1	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g04793	CYC3B, CYCA2;2, CYC2BAT	regulatory protein *(TAM) involved in metaphase to...	0.05	OrthoFinder output from all 47 species
Dcu_g31687	CYCA1;1	regulatory protein *(CYCA) of cell cycle & original...	0.06	OrthoFinder output from all 47 species
GSVIVT01008823001	CYCA1;1	Cell cycle.regulation.cyclins.CYCA-type cyclin	0.1	OrthoFinder output from all 47 species
GSVIVT01009399001	CYCA3;1	Cell cycle.regulation.cyclins.CYCA-type cyclin	0.05	OrthoFinder output from all 47 species
GSVIVT01035718001	CYC3B, CYCA2;2, CYC2BAT	Cell cycle.regulation.cyclins.CYCA-type cyclin	0.04	OrthoFinder output from all 47 species
Gb_03779	CYC3B, CYCA2;2, CYC2BAT	cyclin (CYCA)	0.05	OrthoFinder output from all 47 species
Gb_07594	CYC3B, CYCA2;2, CYC2BAT	cyclin (CYCA)	0.07	OrthoFinder output from all 47 species
Gb_10619	CYCA1;1	cyclin (CYCA)	0.07	OrthoFinder output from all 47 species
LOC_Os01g13260.1	CYCA1;1, LOC_Os01g13260	cyclin (CYCA)	0.08	OrthoFinder output from all 47 species
LOC_Os03g41100.1	CYCA3;1, LOC_Os03g41100	cyclin (CYCA)	0.09	OrthoFinder output from all 47 species
LOC_Os12g20324.1	CYCA1;1, LOC_Os12g20324	cyclin (CYCA)	0.03	OrthoFinder output from all 47 species
LOC_Os12g31810.1	CYCA2;4, LOC_Os12g31810	cyclin (CYCA)	0.04	OrthoFinder output from all 47 species
LOC_Os12g39210.1	CYCA3;4, LOC_Os12g39210	cyclin (CYCA)	0.1	OrthoFinder output from all 47 species
Len_g08312	CYC3B, CYCA2;2, CYC2BAT	regulatory protein *(CYCA) of cell cycle & original...	0.05	OrthoFinder output from all 47 species
Len_g21318	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.04	OrthoFinder output from all 47 species
Lfl_g27348	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.05	OrthoFinder output from all 47 species
Lfl_g27435	CYCA1;1	regulatory protein *(CYCA) of cell cycle & original...	0.05	OrthoFinder output from all 47 species
Lfl_g39997	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.04	OrthoFinder output from all 47 species
MA_103138g0010	CYCA1;1	cyclin (CYCA)	0.05	OrthoFinder output from all 47 species
MA_6619g0010	CYCA1;1	cyclin (CYCA)	0.04	OrthoFinder output from all 47 species
MA_88982g0010	CYC3B, CYCA2;2, CYC2BAT	cyclin (CYCA)	0.03	OrthoFinder output from all 47 species
Mp2g25500.1	CYCA1;1	cyclin (CYCA)	0.04	OrthoFinder output from all 47 species
Msp_g10135	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.08	OrthoFinder output from all 47 species
Msp_g12560	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.07	OrthoFinder output from all 47 species
Nbi_g06697	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.07	OrthoFinder output from all 47 species
Nbi_g16546	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.04	OrthoFinder output from all 47 species
Nbi_g24493	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.07	OrthoFinder output from all 47 species
Ppi_g05200	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.03	OrthoFinder output from all 47 species
Ppi_g07555	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.03	OrthoFinder output from all 47 species
Ppi_g31211	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0031.g010609	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0262.g026906	CYCA1;1	regulatory protein *(CYCA) of cell cycle & original...	0.04	OrthoFinder output from all 47 species
Sam_g12488	No alias	regulatory protein *(TAM) involved in metaphase to...	0.07	OrthoFinder output from all 47 species
Sam_g12489	No alias	regulatory protein *(TAM) involved in metaphase to...	0.07	OrthoFinder output from all 47 species
Sam_g28585	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Sam_g51377	No alias	regulatory protein *(TAM) involved in metaphase to...	0.02	OrthoFinder output from all 47 species
Smo97411	CYCA1;1	Cell cycle.regulation.cyclins.CYCA-type cyclin	0.03	OrthoFinder output from all 47 species
Solyc03g120440.3.1	CYCA2;4, Solyc03g120440	cyclin (CYCA)	0.07	OrthoFinder output from all 47 species
Solyc04g078310.3.1	CYCA3;1, Solyc04g078310	cyclin (CYCA)	0.08	OrthoFinder output from all 47 species
Solyc06g065680.3.1	CYCA2;4, Solyc06g065680	cyclin (CYCA)	0.07	OrthoFinder output from all 47 species
Solyc11g005090.2.1	CYCA1;1, Solyc11g005090	cyclin (CYCA)	0.08	OrthoFinder output from all 47 species
Spa_g11240	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.06	OrthoFinder output from all 47 species
Spa_g11241	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.03	OrthoFinder output from all 47 species
Spa_g11267	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.07	OrthoFinder output from all 47 species
Spa_g30899	CYCA1;1	not classified & original description: none	0.07	OrthoFinder output from all 47 species
Tin_g03369	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.07	OrthoFinder output from all 47 species
Tin_g30126	CYCA1;1	regulatory protein *(TAM) involved in metaphase to...	0.07	OrthoFinder output from all 47 species
Zm00001e003049_P002	CYCA3;1, Zm00001e003049	cyclin (CYCA)	0.03	OrthoFinder output from all 47 species
Zm00001e005138_P001	CYCA3;1, Zm00001e005138	cyclin (CYCA)	0.05	OrthoFinder output from all 47 species
Zm00001e013250_P002	CYC3B, CYCA2;2,...	cyclin (CYCA)	0.05	OrthoFinder output from all 47 species
Zm00001e017335_P001	CYCA1;1, Zm00001e017335	cyclin (CYCA)	0.09	OrthoFinder output from all 47 species
Zm00001e017993_P001	CYCA3;1, Zm00001e017993	cyclin (CYCA)	0.03	OrthoFinder output from all 47 species
Zm00001e026125_P002	CYCA1;1, Zm00001e026125	cyclin (CYCA)	0.08	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0001558	regulation of cell growth	None	Extended
MF	GO:0003674	molecular_function	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	None	Extended
BP	GO:0006261	DNA-templated DNA replication	None	Extended
BP	GO:0006275	regulation of DNA replication	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007346	regulation of mitotic cell cycle	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008283	cell population proliferation	IGI	Interproscan
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009888	tissue development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010374	stomatal complex development	IGI	Interproscan
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	IGI	Interproscan
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	RCA	Interproscan
BP	GO:0010498	proteasomal protein catabolic process	None	Extended
BP	GO:0010564	regulation of cell cycle process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	ISS	Interproscan
MF	GO:0019207	kinase regulator activity	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019887	protein kinase regulator activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0022402	cell cycle process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	None	Extended
BP	GO:0022604	regulation of cell morphogenesis	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035966	response to topologically incorrect protein	None	Extended
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0042023	DNA endoreduplication	RCA	Interproscan
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	RCA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043248	proteasome assembly	RCA	Interproscan
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
BP	GO:0044786	cell cycle DNA replication	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051510	regulation of unidimensional cell growth	RCA	Interproscan
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0051726	regulation of cell cycle	ISS	Interproscan
BP	GO:0051788	response to misfolded protein	RCA	Interproscan
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0090558	plant epidermis development	None	Extended
MF	GO:0098772	molecular function regulator activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901987	regulation of cell cycle phase transition	None	Extended
BP	GO:1901990	regulation of mitotic cell cycle phase transition	None	Extended
BP	GO:1902749	regulation of cell cycle G2/M phase transition	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000226	microtubule cytoskeleton organization	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
BP	GO:0006304	DNA modification	IEP	HCCA
BP	GO:0006305	DNA alkylation	IEP	HCCA
BP	GO:0006306	DNA methylation	IEP	HCCA
BP	GO:0006479	protein methylation	IEP	HCCA
BP	GO:0006996	organelle organization	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007017	microtubule-based process	IEP	HCCA
BP	GO:0007051	spindle organization	IEP	HCCA
BP	GO:0007088	regulation of mitotic nuclear division	IEP	HCCA
BP	GO:0007113	endomitotic cell cycle	IEP	HCCA
BP	GO:0007129	homologous chromosome pairing at meiosis	IEP	HCCA
BP	GO:0007276	gamete generation	IEP	HCCA
BP	GO:0008213	protein alkylation	IEP	HCCA
MF	GO:0008565	obsolete protein transporter activity	IEP	HCCA
BP	GO:0009555	pollen development	IEP	HCCA
BP	GO:0016458	obsolete gene silencing	IEP	HCCA
BP	GO:0016570	histone modification	IEP	HCCA
BP	GO:0016571	histone methylation	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0032875	regulation of DNA endoreduplication	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0040020	regulation of meiotic nuclear division	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044728	DNA methylation or demethylation	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0051225	spindle assembly	IEP	HCCA
BP	GO:0051302	regulation of cell division	IEP	HCCA
BP	GO:0051445	regulation of meiotic cell cycle	IEP	HCCA
BP	GO:0051567	histone H3-K9 methylation	IEP	HCCA
BP	GO:0051783	regulation of nuclear division	IEP	HCCA
BP	GO:0061647	histone H3-K9 modification	IEP	HCCA
BP	GO:0070925	organelle assembly	IEP	HCCA
BP	GO:0090329	regulation of DNA-templated DNA replication	IEP	HCCA
BP	GO:0140694	non-membrane-bounded organelle assembly	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004367	Cyclin_C-dom	329	450
IPR006671	Cyclin_N	200	327

External Links

No external refs found!

AT1G80370 (CYCA2;4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation