AT1G79990

Description : structural molecules

Gene families : OG0002111 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002111_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G79990
Cluster	HCCA: Cluster_130

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00142p00013680	evm_27.TU.AmTr_v1...	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.11	OrthoFinder output from all 47 species
Adi_g015312	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Adi_g088099	No alias	subunit beta2 of coat protein complex & original...	0.05	OrthoFinder output from all 47 species
Aev_g13025	No alias	subunit beta2 of coat protein complex & original...	0.06	OrthoFinder output from all 47 species
Ala_g02602	No alias	subunit beta2 of coat protein complex & original...	0.13	OrthoFinder output from all 47 species
Als_g04780	No alias	not classified & original description: none	0.08	OrthoFinder output from all 47 species
Als_g23306	No alias	subunit beta2 of coat protein complex & original...	0.04	OrthoFinder output from all 47 species
Als_g23307	No alias	subunit beta2 of coat protein complex & original...	0.06	OrthoFinder output from all 47 species
Aob_g06720	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Aop_g12571	No alias	subunit beta2 of coat protein complex & original...	0.05	OrthoFinder output from all 47 species
Azfi_s0001.g000608	No alias	subunit beta2 of coat protein complex & original...	0.11	OrthoFinder output from all 47 species
Azfi_s0038.g026263	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Cba_g14578	No alias	subunit beta2 of coat protein complex & original...	0.04	OrthoFinder output from all 47 species
Ceric.30G060200.1	Ceric.30G060200	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020903.33	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.06	OrthoFinder output from all 47 species
Cre02.g118500	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.08	OrthoFinder output from all 47 species
Dac_g05778	No alias	subunit beta2 of coat protein complex & original...	0.04	OrthoFinder output from all 47 species
Dcu_g04083	No alias	subunit beta2 of coat protein complex & original...	0.11	OrthoFinder output from all 47 species
Dde_g02366	No alias	subunit beta2 of coat protein complex & original...	0.04	OrthoFinder output from all 47 species
Ehy_g02910	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Ehy_g08641	No alias	subunit beta2 of coat protein complex & original...	0.05	OrthoFinder output from all 47 species
GSVIVT01017121001	No alias	Vesicle trafficking.Coat protein I (COPI) coatomer...	0.11	OrthoFinder output from all 47 species
Gb_26317	No alias	subunit beta2 of coat protein complex	0.08	OrthoFinder output from all 47 species
LOC_Os02g11830.2	LOC_Os02g11830	subunit beta2 of coat protein complex	0.1	OrthoFinder output from all 47 species
LOC_Os02g11840.1	LOC_Os02g11840	subunit beta2 of coat protein complex	0.07	OrthoFinder output from all 47 species
LOC_Os06g05180.3	LOC_Os06g05180	Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica...	0.14	OrthoFinder output from all 47 species
Len_g12266	No alias	subunit beta2 of coat protein complex & original...	0.13	OrthoFinder output from all 47 species
Len_g46090	No alias	subunit beta2 of coat protein complex & original...	0.06	OrthoFinder output from all 47 species
Len_g57302	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05710	No alias	subunit beta2 of coat protein complex & original...	0.13	OrthoFinder output from all 47 species
MA_10436677g0010	No alias	Coatomer subunit beta-3 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
MA_10436836g0020	No alias	Coatomer subunit beta-1 OS=Oryza sativa subsp. japonica...	0.03	OrthoFinder output from all 47 species
MA_10436968g0010	No alias	peroxisomal polyamine oxidase (PAO2/3/4). subunit beta2...	0.04	OrthoFinder output from all 47 species
Mp3g04060.1	No alias	subunit beta2 of coat protein complex	0.11	OrthoFinder output from all 47 species
Msp_g01672	No alias	subunit beta2 of coat protein complex & original...	0.07	OrthoFinder output from all 47 species
Nbi_g07405	No alias	subunit beta2 of coat protein complex & original...	0.05	OrthoFinder output from all 47 species
Ore_g10228	No alias	subunit beta2 of coat protein complex & original...	0.05	OrthoFinder output from all 47 species
Pir_g14528	No alias	subunit beta2 of coat protein complex & original...	0.06	OrthoFinder output from all 47 species
Ppi_g01343	No alias	subunit beta2 of coat protein complex & original...	0.06	OrthoFinder output from all 47 species
Sacu_v1.1_s0058.g014985	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Sam_g08319	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Solyc03g120270.4.1	Solyc03g120270	subunit beta2 of coat protein complex	0.14	OrthoFinder output from all 47 species
Solyc06g066730.3.1	Solyc06g066730	subunit beta2 of coat protein complex	0.15	OrthoFinder output from all 47 species
Solyc12g043000.3.1	Solyc12g043000	subunit beta2 of coat protein complex	0.18	OrthoFinder output from all 47 species
Spa_g10496	No alias	subunit beta2 of coat protein complex & original...	0.07	OrthoFinder output from all 47 species
Spa_g17544	No alias	subunit beta2 of coat protein complex & original...	0.08	OrthoFinder output from all 47 species
Spa_g50190	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Tin_g02168	No alias	subunit beta2 of coat protein complex & original...	0.03	OrthoFinder output from all 47 species
Zm00001e014494_P001	Zm00001e014494	subunit beta2 of coat protein complex	0.18	OrthoFinder output from all 47 species
Zm00001e024969_P001	Zm00001e024969	subunit beta2 of coat protein complex	0.19	OrthoFinder output from all 47 species
Zm00001e030001_P002	Zm00001e030001	subunit beta2 of coat protein complex	0.15	OrthoFinder output from all 47 species
Zm00001e036524_P002	Zm00001e036524	subunit beta2 of coat protein complex	0.08	OrthoFinder output from all 47 species
Zm00001e037375_P002	Zm00001e037375	subunit beta2 of coat protein complex	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006644	phospholipid metabolic process	None	Extended
BP	GO:0006650	glycerophospholipid metabolic process	None	Extended
BP	GO:0006661	phosphatidylinositol biosynthetic process	RCA	Interproscan
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0008654	phospholipid biosynthetic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0019637	organophosphate metabolic process	None	Extended
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030126	COPI vesicle coat	ISS	Interproscan
BP	GO:0030163	protein catabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0045017	glycerolipid biosynthetic process	None	Extended
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0046474	glycerophospholipid biosynthetic process	None	Extended
BP	GO:0046486	glycerolipid metabolic process	None	Extended
BP	GO:0046488	phosphatidylinositol metabolic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090407	organophosphate biosynthetic process	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000062	fatty-acyl-CoA binding	IEP	HCCA
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
BP	GO:0000919	cell plate assembly	IEP	HCCA
MF	GO:0003980	UDP-glucose:glycoprotein glucosyltransferase activity	IEP	HCCA
MF	GO:0005215	transporter activity	IEP	HCCA
MF	GO:0005384	manganese ion transmembrane transporter activity	IEP	HCCA
MF	GO:0005388	P-type calcium transporter activity	IEP	HCCA
MF	GO:0005496	steroid binding	IEP	HCCA
CC	GO:0005768	endosome	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
CC	GO:0005783	endoplasmic reticulum	IEP	HCCA
CC	GO:0005794	Golgi apparatus	IEP	HCCA
CC	GO:0005795	Golgi stack	IEP	HCCA
CC	GO:0005797	Golgi medial cisterna	IEP	HCCA
CC	GO:0005801	cis-Golgi network	IEP	HCCA
CC	GO:0005802	trans-Golgi network	IEP	HCCA
CC	GO:0005874	microtubule	IEP	HCCA
CC	GO:0005911	cell-cell junction	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006497	protein lipidation	IEP	HCCA
BP	GO:0006498	N-terminal protein lipidation	IEP	HCCA
BP	GO:0006499	N-terminal protein myristoylation	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006828	manganese ion transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
MF	GO:0008142	oxysterol binding	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
CC	GO:0009506	plasmodesma	IEP	HCCA
BP	GO:0009626	plant-type hypersensitive response	IEP	HCCA
BP	GO:0010228	vegetative to reproductive phase transition of meristem	IEP	HCCA
CC	GO:0012505	endomembrane system	IEP	HCCA
MF	GO:0015085	calcium ion transmembrane transporter activity	IEP	HCCA
MF	GO:0015399	primary active transmembrane transporter activity	IEP	HCCA
MF	GO:0015410	ABC-type manganese transporter activity	IEP	HCCA
MF	GO:0015662	P-type ion transporter activity	IEP	HCCA
MF	GO:0015926	glucosidase activity	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0016926	protein desumoylation	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0018377	protein myristoylation	IEP	HCCA
MF	GO:0019829	ATPase-coupled monoatomic cation transmembrane transporter activity	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022607	cellular component assembly	IEP	HCCA
MF	GO:0022853	active monoatomic ion transmembrane transporter activity	IEP	HCCA
MF	GO:0022890	inorganic cation transmembrane transporter activity	IEP	HCCA
CC	GO:0030054	cell junction	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
MF	GO:0030276	clathrin binding	IEP	HCCA
BP	GO:0031365	N-terminal protein amino acid modification	IEP	HCCA
CC	GO:0031410	cytoplasmic vesicle	IEP	HCCA
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	HCCA
CC	GO:0031982	vesicle	IEP	HCCA
CC	GO:0031984	organelle subcompartment	IEP	HCCA
CC	GO:0031985	Golgi cisterna	IEP	HCCA
MF	GO:0032934	sterol binding	IEP	HCCA
MF	GO:0033218	amide binding	IEP	HCCA
BP	GO:0034050	programmed cell death induced by symbiont	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	IEP	HCCA
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0043543	protein acylation	IEP	HCCA
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	HCCA
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0050665	hydrogen peroxide biosynthetic process	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
BP	GO:0051702	biological process involved in interaction with symbiont	IEP	HCCA
BP	GO:0052546	cell wall pectin metabolic process	IEP	HCCA
BP	GO:0055071	manganese ion homeostasis	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
CC	GO:0070161	anchoring junction	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
CC	GO:0080008	Cul4-RING E3 ubiquitin ligase complex	IEP	HCCA
CC	GO:0097708	intracellular vesicle	IEP	HCCA
CC	GO:0098791	Golgi apparatus subcompartment	IEP	HCCA
MF	GO:0120227	acyl-CoA binding	IEP	HCCA
MF	GO:0140358	P-type transmembrane transporter activity	IEP	HCCA
MF	GO:0140359	ABC-type transporter activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901567	fatty acid derivative binding	IEP	HCCA
MF	GO:1901681	sulfur compound binding	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
BP	GO:1903409	reactive oxygen species biosynthetic process	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR019185	Integral_membrane_SYS1-rel	4	145
IPR001680	WD40_repeat	349	386
IPR001680	WD40_repeat	392	430
IPR001680	WD40_repeat	435	471
IPR001680	WD40_repeat	306	342
IPR006692	Coatomer_WD-assoc_reg	534	977

External Links

No external refs found!

AT1G79990

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation