AT1G79350 (EMB1135)

Aliases : EMB1135

Description : RING/FYVE/PHD zinc finger superfamily protein

Gene families : OG0002623 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002623_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G79350
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00037p00121600	EMB1135,...	Protein FORGETTER 1 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
Adi_g021474	EMB1135	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Ala_g16049	EMB1135	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Als_g08125	EMB1135	not classified & original description: none	0.06	OrthoFinder output from all 47 species
Aop_g59829	EMB1135	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene64793.t1	EMB1135, Aspi01Gene64793	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Cre01.g053250	EMB1135	Protein FORGETTER 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Cre02.g095045	EMB1135	Protein FORGETTER 1 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
Dcu_g13353	EMB1135	not classified & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01036703001	EMB1135	Protein FORGETTER 1 OS=Arabidopsis thaliana	0.05	OrthoFinder output from all 47 species
LOC_Os04g52020.1	EMB1135, LOC_Os04g52020	Protein FORGETTER 1 OS=Arabidopsis thaliana...	0.08	OrthoFinder output from all 47 species
LOC_Os08g12680.1	EMB1135, LOC_Os08g12680	Protein FORGETTER 1 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
MA_10436402g0020	EMB1135	Protein FORGETTER 1 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
Mp1g14790.1	EMB1135	Protein FORGETTER 1 OS=Arabidopsis thaliana...	0.05	OrthoFinder output from all 47 species
Nbi_g27546	EMB1135	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Spa_g10872	EMB1135	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Zm00001e040038_P001	EMB1135, Zm00001e040038	Protein FORGETTER 1 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	NAS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0000014	single-stranded DNA endodeoxyribonuclease activity	IEP	HCCA
CC	GO:0000109	nucleotide-excision repair complex	IEP	HCCA
CC	GO:0000110	nucleotide-excision repair factor 1 complex	IEP	HCCA
CC	GO:0000151	ubiquitin ligase complex	IEP	HCCA
BP	GO:0000710	meiotic mismatch repair	IEP	HCCA
BP	GO:0000712	resolution of meiotic recombination intermediates	IEP	HCCA
BP	GO:0000724	double-strand break repair via homologous recombination	IEP	HCCA
BP	GO:0000725	recombinational repair	IEP	HCCA
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0004518	nuclease activity	IEP	HCCA
MF	GO:0004519	endonuclease activity	IEP	HCCA
MF	GO:0004520	endodeoxyribonuclease activity	IEP	HCCA
MF	GO:0004536	deoxyribonuclease activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
CC	GO:0005795	Golgi stack	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006289	nucleotide-excision repair	IEP	HCCA
BP	GO:0006296	obsolete nucleotide-excision repair, DNA incision, 5'-to lesion	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
BP	GO:0006302	double-strand break repair	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0007033	vacuole organization	IEP	HCCA
BP	GO:0007346	regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0008152	metabolic process	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0009292	horizontal gene transfer	IEP	HCCA
BP	GO:0009294	DNA-mediated transformation	IEP	HCCA
BP	GO:0009314	response to radiation	IEP	HCCA
BP	GO:0009606	tropism	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009629	response to gravity	IEP	HCCA
BP	GO:0009630	gravitropism	IEP	HCCA
BP	GO:0009892	negative regulation of metabolic process	IEP	HCCA
BP	GO:0010605	negative regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010629	negative regulation of gene expression	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016887	ATP hydrolysis activity	IEP	HCCA
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
BP	GO:0032527	protein exit from endoplasmic reticulum	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044260	cellular macromolecule metabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0045787	positive regulation of cell cycle	IEP	HCCA
BP	GO:0045931	positive regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0061982	meiosis I cell cycle process	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
BP	GO:0071704	organic substance metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR026937	SBNO_Helicase_C_dom	782	1074
IPR019787	Znf_PHD-finger	693	741
IPR039187	SNO_AAA	213	514

External Links

No external refs found!

AT1G79350 (EMB1135)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation