AT1G77340

Description : Pentatricopeptide repeat (PPR) superfamily protein

Gene families : OG0011369 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0011369_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G77340
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method	Actions
AMTR_s00055p00197790	evm_27.TU.AmTr_v1...	Pentatricopeptide repeat-containing protein At5g65560...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0008150	biological_process	ND	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0004407	histone deacetylase activity	IEP	HCCA
BP	GO:0009910	negative regulation of flower development	IEP	HCCA
MF	GO:0016811	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	IEP	HCCA
MF	GO:0019213	deacetylase activity	IEP	HCCA
MF	GO:0033558	protein lysine deacetylase activity	IEP	HCCA
BP	GO:0042752	regulation of circadian rhythm	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	297	342
IPR002885	Pentatricopeptide_repeat	153	202
IPR002885	Pentatricopeptide_repeat	224	271
IPR002885	Pentatricopeptide_repeat	359	391
IPR002885	Pentatricopeptide_repeat	122	148

External Links

No external refs found!