AT1G76580

Description : Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

Gene families : OG0001309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001309_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G76580

Target	Alias	Description	ECC score	Gene Family Method
Ala_g14533	No alias	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g15978	No alias	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g08355	No alias	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.10G052200.1	SPL12, Ceric.10G052200	SBP-type transcription factor & original description:...	0.03	OrthoFinder output from all 47 species
Dcu_g10806	No alias	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g13220	SPL12	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01028208001	SPL1	RNA biosynthesis.transcriptional activation.SBP...	0.03	OrthoFinder output from all 47 species
MA_10434066g0020	No alias	Squamosa promoter-binding-like protein 15 OS=Oryza...	0.03	OrthoFinder output from all 47 species
MA_16835g0010	SPL1	Squamosa promoter-binding-like protein 1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Pnu_g13310	SPL12	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g60536	SPL12	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g39394	No alias	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Solyc05g053240.4.1	SPL1, Solyc05g053240	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
Spa_g26324	SPL1	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e025436_P002	SPL1, Zm00001e025436	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000956	nuclear-transcribed mRNA catabolic process	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005102	signaling receptor binding	IEP	HCCA
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	HCCA
MF	GO:0005402	carbohydrate:monoatomic cation symporter activity	IEP	HCCA
BP	GO:0006401	RNA catabolic process	IEP	HCCA
BP	GO:0006402	mRNA catabolic process	IEP	HCCA
BP	GO:0006486	protein glycosylation	IEP	HCCA
BP	GO:0006487	protein N-linked glycosylation	IEP	HCCA
MF	GO:0008728	GTP diphosphokinase activity	IEP	HCCA
BP	GO:0009933	meristem structural organization	IEP	HCCA
MF	GO:0015078	proton transmembrane transporter activity	IEP	HCCA
MF	GO:0015144	carbohydrate transmembrane transporter activity	IEP	HCCA
MF	GO:0015293	symporter activity	IEP	HCCA
MF	GO:0015294	solute:monoatomic cation symporter activity	IEP	HCCA
MF	GO:0015295	solute:proton symporter activity	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016778	diphosphotransferase activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
MF	GO:0033612	receptor serine/threonine kinase binding	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043413	macromolecule glycosylation	IEP	HCCA
BP	GO:0048532	anatomical structure arrangement	IEP	HCCA
BP	GO:0070085	glycosylation	IEP	HCCA
MF	GO:0070696	transmembrane receptor protein serine/threonine kinase binding	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	82	155

External Links

No external refs found!

AT1G76580

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation