AT1G75540 (STH2)

Aliases : STH2

Description : salt tolerance homolog2

Gene families : OG0000403 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000403_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G75540

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00021p00250410	LZF1, STH3,...	RNA biosynthesis.transcriptional activation.C2C2...	0.03	OrthoFinder output from all 47 species
AT2G31380	STH	salt tolerance homologue	0.03	OrthoFinder output from all 47 species
AT2G47890	No alias	B-box type zinc finger protein with CCT domain	0.05	OrthoFinder output from all 47 species
AT4G38960	No alias	B-box type zinc finger family protein	0.04	OrthoFinder output from all 47 species
Als_g14676	STO	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Als_g28425	No alias	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g06573	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g11974	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g06936	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g11226	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene08384.t1	LZF1, STH3,...	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene32817.t1	Aspi01Gene32817	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene45209.t1	LZF1, STH3,...	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene62651.t2	Aspi01Gene62651	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0006.g009705	No alias	BBX class-IV transcription factor & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0046.g030190	LZF1, STH3, DBB3	BBX class-IV transcription factor & original...	0.03	OrthoFinder output from all 47 species
Cba_g12122	No alias	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.11G021600.1	Ceric.11G021600	BBX class-IV transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.1Z197300.1	LZF1, STH3,...	BBX class-IV transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ceric.27G000600.1	LZF1, STH3,...	BBX class-IV transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dac_g08426	STH	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g01138	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os02g43170.1	LOC_Os02g43170	transcription factor (BBX-DBB)	0.07	OrthoFinder output from all 47 species
LOC_Os04g45690.1	LOC_Os04g45690	transcription factor (BBX-DBB)	0.03	OrthoFinder output from all 47 species
LOC_Os05g11510.1	LZF1, STH3,...	transcription factor (BBX-DBB)	0.04	OrthoFinder output from all 47 species
LOC_Os09g35880.1	LOC_Os09g35880	transcription factor (BBX-DBB)	0.02	OrthoFinder output from all 47 species
Len_g08555	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g59223	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g21663	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g07627	No alias	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g36960	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g39045	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g28592	STO	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g65956	No alias	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g31497	No alias	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g32457	LZF1, STH3, DBB3	BBX class-IV transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Sacu_v1.1_s0084.g018285	STO	BBX class-IV transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g03827	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc01g110370.4.1	Solyc01g110370	transcription factor (BBX-DBB)	0.03	OrthoFinder output from all 47 species
Solyc12g089240.2.1	STH2, Solyc12g089240	transcription factor (BBX-DBB)	0.03	OrthoFinder output from all 47 species
Spa_g29582	STH	BBX class-IV transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e007388_P002	STH2, Zm00001e007388	transcription factor (BBX-DBB)	0.02	OrthoFinder output from all 47 species
Zm00001e022915_P001	STO, Zm00001e022915	transcription factor (BBX-DBB)	0.05	OrthoFinder output from all 47 species
Zm00001e030030_P001	LZF1, STH3,...	transcription factor (BBX-DBB)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IMP	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009641	shade avoidance	IMP	Interproscan
BP	GO:0009641	shade avoidance	IGI	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
MF	GO:0004673	protein histidine kinase activity	IEP	HCCA
MF	GO:0004707	MAP kinase activity	IEP	HCCA
MF	GO:0004805	trehalose-phosphatase activity	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0009612	response to mechanical stimulus	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009968	negative regulation of signal transduction	IEP	HCCA
BP	GO:0010072	primary shoot apical meristem specification	IEP	HCCA
BP	GO:0010104	regulation of ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0010105	negative regulation of ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0010648	negative regulation of cell communication	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0019203	carbohydrate phosphatase activity	IEP	HCCA
BP	GO:0019722	calcium-mediated signaling	IEP	HCCA
BP	GO:0019932	second-messenger-mediated signaling	IEP	HCCA
BP	GO:0023057	negative regulation of signaling	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
BP	GO:0048768	root hair cell tip growth	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
MF	GO:0051740	ethylene binding	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA
BP	GO:0070297	regulation of phosphorelay signal transduction system	IEP	HCCA
BP	GO:0070298	negative regulation of phosphorelay signal transduction system	IEP	HCCA
MF	GO:0072328	alkene binding	IEP	HCCA
BP	GO:0090421	embryonic meristem initiation	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1902531	regulation of intracellular signal transduction	IEP	HCCA
BP	GO:1902532	negative regulation of intracellular signal transduction	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000315	Znf_B-box	57	95
IPR000315	Znf_B-box	3	34

External Links

No external refs found!

AT1G75540 (STH2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation