1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G74580

AT1G74580


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G74580
Cluster HCCA: Cluster_65

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.02 OrthoFinder output from all 47 species
AMTR_s00221p00020810 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g16420,... 0.02 OrthoFinder output from all 47 species
AT5G18475 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Cba_g01242 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.06 OrthoFinder output from all 47 species
GSVIVT01024665001 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.05 OrthoFinder output from all 47 species
GSVIVT01027435001 No alias Pentatricopeptide repeat-containing protein At1g05600... 0.03 OrthoFinder output from all 47 species
GSVIVT01031218001 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.02 OrthoFinder output from all 47 species
GSVIVT01034953001 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.03 OrthoFinder output from all 47 species
Gb_12262 No alias Pentatricopeptide repeat-containing protein At3g53700,... 0.03 OrthoFinder output from all 47 species
Gb_37573 No alias Pentatricopeptide repeat-containing protein At5g64320,... 0.03 OrthoFinder output from all 47 species
LOC_Os05g04160.1 LOC_Os05g04160 Pentatricopeptide repeat-containing protein At3g48810... 0.02 OrthoFinder output from all 47 species
LOC_Os08g39050.1 LOC_Os08g39050 Pentatricopeptide repeat-containing protein At1g80150,... 0.01 OrthoFinder output from all 47 species
MA_525159g0010 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.02 OrthoFinder output from all 47 species
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0044.g012950 No alias not classified & original description: CDS=1-1968 0.03 OrthoFinder output from all 47 species
Solyc11g068470.3.1 Solyc11g068470 group-II intron mitochondrial splicing factor (MISF74) 0.03 OrthoFinder output from all 47 species
Solyc12g035170.3.1 Solyc12g035170 Putative pentatricopeptide repeat-containing protein... 0.04 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000003 reproduction IEP HCCA
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP HCCA
BP GO:0002376 immune system process IEP HCCA
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP HCCA
MF GO:0004519 endonuclease activity IEP HCCA
MF GO:0004521 endoribonuclease activity IEP HCCA
MF GO:0004525 ribonuclease III activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
MF GO:0004673 protein histidine kinase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP HCCA
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP HCCA
BP GO:0006955 immune response IEP HCCA
BP GO:0007154 cell communication IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007623 circadian rhythm IEP HCCA
BP GO:0009556 microsporogenesis IEP HCCA
BP GO:0009615 response to virus IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010073 meristem maintenance IEP HCCA
BP GO:0010155 regulation of proton transport IEP HCCA
BP GO:0010216 maintenance of DNA methylation IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016208 AMP binding IEP HCCA
BP GO:0016441 post-transcriptional gene silencing IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP HCCA
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
BP GO:0023052 signaling IEP HCCA
BP GO:0030422 siRNA processing IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP HCCA
BP GO:0034293 sexual sporulation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035196 miRNA processing IEP HCCA
BP GO:0043934 sporulation IEP HCCA
BP GO:0045087 innate immune response IEP HCCA
BP GO:0048236 plant-type sporogenesis IEP HCCA
BP GO:0048511 rhythmic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0051321 meiotic cell cycle IEP HCCA
BP GO:0051607 defense response to virus IEP HCCA
BP GO:0052386 cell wall thickening IEP HCCA
BP GO:0052543 callose deposition in cell wall IEP HCCA
BP GO:0070918 regulatory ncRNA processing IEP HCCA
BP GO:0071478 cellular response to radiation IEP HCCA
BP GO:0071482 cellular response to light stimulus IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
BP GO:0140546 defense response to symbiont IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 83 103
IPR002885 Pentatricopeptide_repeat 678 703
IPR002885 Pentatricopeptide_repeat 350 381
IPR002885 Pentatricopeptide_repeat 529 578
IPR002885 Pentatricopeptide_repeat 284 333
IPR002885 Pentatricopeptide_repeat 217 263
IPR002885 Pentatricopeptide_repeat 389 438
IPR002885 Pentatricopeptide_repeat 602 649
IPR002885 Pentatricopeptide_repeat 109 158
IPR002885 Pentatricopeptide_repeat 459 508
No external refs found!