AT1G74350

Description : Intron maturase, type II family protein

Gene families : OG0003235 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003235_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G74350
Cluster	HCCA: Cluster_97

Target	Alias	Description	ECC score	Gene Family Method
Als_g18440	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g11840	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g40621	No alias	nMAT3/4 type-II mitochondrial RNA splicing factor &...	0.02	OrthoFinder output from all 47 species
Solyc09g010285.1.1	Solyc09g010285	nMAT3/4 type-II mitochondrial RNA splicing factor	0.02	OrthoFinder output from all 47 species
Tin_g46157	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e030412_P001	Zm00001e030412	nMAT3/4 type-II mitochondrial RNA splicing factor	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003964	RNA-directed DNA polymerase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006278	RNA-templated DNA biosynthetic process	ISS	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
MF	GO:0034061	DNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071897	DNA biosynthetic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0003691	double-stranded telomeric DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003713	transcription coactivator activity	IEP	HCCA
MF	GO:0004888	transmembrane signaling receptor activity	IEP	HCCA
MF	GO:0004930	G protein-coupled receptor activity	IEP	HCCA
MF	GO:0005200	structural constituent of cytoskeleton	IEP	HCCA
CC	GO:0005694	chromosome	IEP	HCCA
CC	GO:0005885	Arp2/3 protein complex	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006261	DNA-templated DNA replication	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	HCCA
MF	GO:0008020	G protein-coupled photoreceptor activity	IEP	HCCA
BP	GO:0009555	pollen development	IEP	HCCA
BP	GO:0009628	response to abiotic stimulus	IEP	HCCA
BP	GO:0009687	abscisic acid metabolic process	IEP	HCCA
BP	GO:0009688	abscisic acid biosynthetic process	IEP	HCCA
BP	GO:0009723	response to ethylene	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009751	response to salicylic acid	IEP	HCCA
BP	GO:0009753	response to jasmonic acid	IEP	HCCA
MF	GO:0009881	photoreceptor activity	IEP	HCCA
MF	GO:0009883	red or far-red light photoreceptor activity	IEP	HCCA
BP	GO:0010017	red or far-red light signaling pathway	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016106	sesquiterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016444	somatic cell DNA recombination	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
MF	GO:0042162	telomeric DNA binding	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
MF	GO:0043047	single-stranded telomeric DNA binding	IEP	HCCA
BP	GO:0043288	apocarotenoid metabolic process	IEP	HCCA
BP	GO:0043289	apocarotenoid biosynthetic process	IEP	HCCA
BP	GO:0045003	double-strand break repair via synthesis-dependent strand annealing	IEP	HCCA
BP	GO:0048229	gametophyte development	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0070542	response to fatty acid	IEP	HCCA
BP	GO:0071489	cellular response to red or far red light	IEP	HCCA
MF	GO:0098847	sequence-specific single stranded DNA binding	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1902644	tertiary alcohol metabolic process	IEP	HCCA
BP	GO:1902645	tertiary alcohol biosynthetic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000477	RT_dom	128	339
IPR024937	Domain_X	533	620

External Links

No external refs found!

AT1G74350

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation