AT1G70600

Description : Ribosomal protein L18e/L15 superfamily protein

Gene families : OG0001601 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001601_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G70600
Cluster	HCCA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00069p00158350	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.17	OrthoFinder output from all 47 species
AMTR_s00130p00058120	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
Adi_g102572	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Adi_g121633	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Adi_g128537	RPL27AB, RPL27A	component *(uL15) of large ribosomal-subunit (LSU)...	0.1	OrthoFinder output from all 47 species
Ala_g05509	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.08	OrthoFinder output from all 47 species
Ala_g19375	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.22	OrthoFinder output from all 47 species
Als_g05994	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g08306	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Als_g56236	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g06147	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.23	OrthoFinder output from all 47 species
Aop_g21837	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Aop_g70429	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.09	OrthoFinder output from all 47 species
Azfi_s0167.g054511	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.22	OrthoFinder output from all 47 species
Azfi_s0617.g079530	RPL27AB, RPL27A	component *(uL15) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Cba_g36881	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Cba_g68308	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ceric.29G012700.1	Ceric.29G012700	component *(uL15) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Cre02.g115200	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.42	OrthoFinder output from all 47 species
Dac_g01203	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.19	OrthoFinder output from all 47 species
Dde_g03669	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Ehy_g18645	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007667001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.09	OrthoFinder output from all 47 species
GSVIVT01032405001	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.07	OrthoFinder output from all 47 species
Gb_05659	No alias	component RPL27a of LSU proteome component	0.25	OrthoFinder output from all 47 species
Gb_26884	No alias	component RPL27a of LSU proteome component	0.09	OrthoFinder output from all 47 species
LOC_Os02g07890.2	LOC_Os02g07890	component RPL27a of LSU proteome component	0.09	OrthoFinder output from all 47 species
LOC_Os03g29460.1	LOC_Os03g29460	component RPL27a of LSU proteome component	0.12	OrthoFinder output from all 47 species
LOC_Os07g42170.1	RPL27AB, RPL27A,...	component RPL27a of LSU proteome component	0.33	OrthoFinder output from all 47 species
Lfl_g25920	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.07	OrthoFinder output from all 47 species
MA_102140g0020	No alias	component RPL27a of LSU proteome component	0.11	OrthoFinder output from all 47 species
MA_10436259g0020	No alias	component RPL27a of LSU proteome component	0.19	OrthoFinder output from all 47 species
Mp1g15440.1	No alias	component RPL27a of LSU proteome component	0.31	OrthoFinder output from all 47 species
Mp5g00120.1	No alias	component RPL27a of LSU proteome component	0.17	OrthoFinder output from all 47 species
Msp_g01324	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.14	OrthoFinder output from all 47 species
Nbi_g27800	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Nbi_g40282	RPL27AB, RPL27A	component *(uL15) of large ribosomal-subunit (LSU)...	0.06	OrthoFinder output from all 47 species
Ore_g07102	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pir_g29637	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g65726	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Pp3c16_22430V3.1	Pp3c16_22430	Ribosomal protein L18e/L15 superfamily protein	0.24	OrthoFinder output from all 47 species
Pp3c20_18830V3.1	Pp3c20_18830	Ribosomal protein L18e/L15 superfamily protein	0.13	OrthoFinder output from all 47 species
Pp3c23_8220V3.1	Pp3c23_8220	Ribosomal protein L18e/L15 superfamily protein	0.01	OrthoFinder output from all 47 species
Pp3c25_13260V3.1	Pp3c25_13260	Ribosomal protein L18e/L15 superfamily protein	0.21	OrthoFinder output from all 47 species
Pp3c6_3470V3.1	Pp3c6_3470	Ribosomal protein L18e/L15 superfamily protein	0.11	OrthoFinder output from all 47 species
Pp3c8_5770V3.1	Pp3c8_5770	Ribosomal protein L18e/L15 superfamily protein	0.22	OrthoFinder output from all 47 species
Ppi_g22284	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.03	OrthoFinder output from all 47 species
Ppi_g46776	RPL27AB, RPL27A	component *(uL15) of large ribosomal-subunit (LSU)...	0.04	OrthoFinder output from all 47 species
Sam_g14847	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Sam_g25032	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.26	OrthoFinder output from all 47 species
Sam_g25695	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.15	OrthoFinder output from all 47 species
Sam_g47290	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.23	OrthoFinder output from all 47 species
Sam_g48454	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.22	OrthoFinder output from all 47 species
Smo165371	No alias	Protein biosynthesis.cytosolic ribosome.large subunit...	0.11	OrthoFinder output from all 47 species
Solyc03g112360.1.1	Solyc03g112360	component RPL27a of LSU proteome component	0.34	OrthoFinder output from all 47 species
Solyc06g071720.1.1	Solyc06g071720	component RPL27a of LSU proteome component	0.11	OrthoFinder output from all 47 species
Spa_g03361	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.05	OrthoFinder output from all 47 species
Spa_g03362	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.11	OrthoFinder output from all 47 species
Spa_g17344	RPL27AB, RPL27A	component *(uL15) of large ribosomal-subunit (LSU)...	0.18	OrthoFinder output from all 47 species
Tin_g02964	No alias	component *(uL15) of large ribosomal-subunit (LSU)...	0.25	OrthoFinder output from all 47 species
Tin_g39675	RPL27AB, RPL27A	component *(uL15) of large ribosomal-subunit (LSU)...	0.02	OrthoFinder output from all 47 species
Zm00001e010753_P001	Zm00001e010753	component RPL27a of LSU proteome component	0.2	OrthoFinder output from all 47 species
Zm00001e035537_P001	Zm00001e035537	component RPL27a of LSU proteome component	0.22	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005840	ribosome	ISS	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015934	large ribosomal subunit	None	Extended
CC	GO:0016020	membrane	IDA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022625	cytosolic large ribosomal subunit	IDA	Interproscan
CC	GO:0022626	cytosolic ribosome	IDA	Interproscan
CC	GO:0030054	cell junction	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000028	ribosomal small subunit assembly	IEP	HCCA
BP	GO:0000469	cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0000478	endonucleolytic cleavage involved in rRNA processing	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005773	vacuole	IEP	HCCA
CC	GO:0005774	vacuolar membrane	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006220	pyrimidine nucleotide metabolic process	IEP	HCCA
BP	GO:0006221	pyrimidine nucleotide biosynthetic process	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
BP	GO:0009117	nucleotide metabolic process	IEP	HCCA
BP	GO:0009165	nucleotide biosynthetic process	IEP	HCCA
BP	GO:0009218	pyrimidine ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009220	pyrimidine ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009259	ribonucleotide metabolic process	IEP	HCCA
BP	GO:0009260	ribonucleotide biosynthetic process	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009664	plant-type cell wall organization	IEP	HCCA
BP	GO:0009734	auxin-activated signaling pathway	IEP	HCCA
BP	GO:0009790	embryo development	IEP	HCCA
BP	GO:0009793	embryo development ending in seed dormancy	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
CC	GO:0015935	small ribosomal subunit	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019637	organophosphate metabolic process	IEP	HCCA
BP	GO:0019693	ribose phosphate metabolic process	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
BP	GO:0022618	ribonucleoprotein complex assembly	IEP	HCCA
CC	GO:0022627	cytosolic small ribosomal subunit	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
BP	GO:0034644	cellular response to UV	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0042545	cell wall modification	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0046390	ribose phosphate biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0048438	floral whorl development	IEP	HCCA
BP	GO:0048467	gynoecium development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	HCCA
BP	GO:0071493	cellular response to UV-B	IEP	HCCA
BP	GO:0071554	cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071555	cell wall organization	IEP	HCCA
BP	GO:0071669	plant-type cell wall organization or biogenesis	IEP	HCCA
BP	GO:0071826	ribonucleoprotein complex subunit organization	IEP	HCCA
BP	GO:0071840	cellular component organization or biogenesis	IEP	HCCA
BP	GO:0072527	pyrimidine-containing compound metabolic process	IEP	HCCA
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0090407	organophosphate biosynthetic process	IEP	HCCA
BP	GO:0090501	RNA phosphodiester bond hydrolysis	IEP	HCCA
BP	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	HCCA
BP	GO:1901137	carbohydrate derivative biosynthetic process	IEP	HCCA
BP	GO:1901293	nucleoside phosphate biosynthetic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR021131	Ribosomal_L18e/L15P	28	143

External Links

No external refs found!

AT1G70600

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation