AT1G69170

Description : Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein

Gene families : OG0000121 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G69170

Target	Alias	Description	ECC score	Gene Family Method
AT1G53160	SPL4	squamosa promoter binding protein-like 4	0.04	OrthoFinder output from all 47 species
Adi_g010861	SPL8	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g104940	SPL8	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aev_g07305	SPL8	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g08975	SPL8	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g08296	SPL8	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Azfi_s0212.g058167	SPL3	SBP-type transcription factor & original description: CDS=1-1182	0.05	OrthoFinder output from all 47 species
Cba_g26158	SPL8	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g26518	SPL2	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ceric.20G077800.1	SPL3, Ceric.20G077800	SBP-type transcription factor & original description:...	0.06	OrthoFinder output from all 47 species
Ceric.23G013900.1	SPL8, Ceric.23G013900	SBP-type transcription factor & original description:...	0.05	OrthoFinder output from all 47 species
Cre07.g345050	SPL3	RNA biosynthesis.transcriptional activation.SBP...	0.02	OrthoFinder output from all 47 species
GSVIVT01014302001	SPL4	RNA biosynthesis.transcriptional activation.SBP...	0.05	OrthoFinder output from all 47 species
GSVIVT01018204001	No alias	RNA biosynthesis.transcriptional activation.SBP...	0.03	OrthoFinder output from all 47 species
GSVIVT01033064001	SPL13, SPL13A	RNA biosynthesis.transcriptional activation.SBP...	0.06	OrthoFinder output from all 47 species
LOC_Os06g44860.1	SPL8, LOC_Os06g44860	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
LOC_Os06g49010.4	SPL2, LOC_Os06g49010	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
LOC_Os09g32944.1	SPL13, SPL13A,...	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
Len_g21188	SPL8	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Len_g52626	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g05547	SPL2	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g14940	SPL2	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g17821	SPL3	SBP-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
MA_10429891g0010	SPL2	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
MA_10429891g0020	No alias	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Pnu_g20544	SPL8	SBP-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ppi_g14541	SPL8	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g57228	SPL8	SBP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc10g018780.3.1	SPL8, Solyc10g018780	transcription factor (SBP)	0.04	OrthoFinder output from all 47 species
Spa_g15676	SPL2	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g18018	SPL8	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g48285	SPL8	SBP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e006686_P001	SPL8, Zm00001e006686	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
Zm00001e013761_P001	SPL2, Zm00001e013761	transcription factor (SBP)	0.12	OrthoFinder output from all 47 species
Zm00001e021425_P001	SPL13, SPL13A,...	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species
Zm00001e021962_P003	SPL13, SPL13A,...	transcription factor (SBP)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	IMP	Interproscan
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042742	defense response to bacterium	IMP	Interproscan
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044419	biological process involved in interspecies interaction between organisms	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
BP	GO:0009409	response to cold	IEP	HCCA
BP	GO:0009411	response to UV	IEP	HCCA
BP	GO:0009838	abscission	IEP	HCCA
BP	GO:0009909	regulation of flower development	IEP	HCCA
BP	GO:0009911	positive regulation of flower development	IEP	HCCA
BP	GO:0009962	regulation of flavonoid biosynthetic process	IEP	HCCA
BP	GO:0010048	vernalization response	IEP	HCCA
BP	GO:0010074	maintenance of meristem identity	IEP	HCCA
BP	GO:0010077	maintenance of inflorescence meristem identity	IEP	HCCA
BP	GO:0010150	leaf senescence	IEP	HCCA
BP	GO:0010154	fruit development	IEP	HCCA
BP	GO:0019827	stem cell population maintenance	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
BP	GO:0031537	regulation of anthocyanin metabolic process	IEP	HCCA
BP	GO:0031540	regulation of anthocyanin biosynthetic process	IEP	HCCA
BP	GO:0032501	multicellular organismal process	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
BP	GO:0043473	pigmentation	IEP	HCCA
BP	GO:0043476	pigment accumulation	IEP	HCCA
BP	GO:0043478	pigment accumulation in response to UV light	IEP	HCCA
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0043480	pigment accumulation in tissues	IEP	HCCA
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	HCCA
BP	GO:0048437	floral organ development	IEP	HCCA
BP	GO:0048440	carpel development	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0048580	regulation of post-embryonic development	IEP	HCCA
BP	GO:0048582	positive regulation of post-embryonic development	IEP	HCCA
BP	GO:0048608	reproductive structure development	IEP	HCCA
BP	GO:0048827	phyllome development	IEP	HCCA
BP	GO:0048831	regulation of shoot system development	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0051094	positive regulation of developmental process	IEP	HCCA
BP	GO:0051239	regulation of multicellular organismal process	IEP	HCCA
BP	GO:0051240	positive regulation of multicellular organismal process	IEP	HCCA
BP	GO:0080187	floral organ senescence	IEP	HCCA
BP	GO:0090693	plant organ senescence	IEP	HCCA
BP	GO:0098727	maintenance of cell number	IEP	HCCA
BP	GO:0099402	plant organ development	IEP	HCCA
BP	GO:2000026	regulation of multicellular organismal development	IEP	HCCA
BP	GO:2000241	regulation of reproductive process	IEP	HCCA
BP	GO:2000243	positive regulation of reproductive process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004333	SBP_dom	124	197

External Links

No external refs found!

AT1G69170

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation