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  5. AT1G68980

AT1G68980


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG0001501 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001501_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G68980

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00179800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g17616... 0.04 OrthoFinder output from all 47 species
AMTR_s00002p00272000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
AMTR_s00019p00220910 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g03100,... 0.02 OrthoFinder output from all 47 species
AT1G03100 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 OrthoFinder output from all 47 species
Adi_g067157 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Adi_g116058 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aev_g28648 CRM3, HCF152 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g14976 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.01G012400.1 Ceric.01G012400 not classified & original description: pacid=50592360... 0.03 OrthoFinder output from all 47 species
Dac_g16736 CRM3, HCF152 plastidial transcript stability factor *(HCF152) &... 0.02 OrthoFinder output from all 47 species
Gb_34245 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
Gb_34895 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.04 OrthoFinder output from all 47 species
LOC_Os01g57900.1 LOC_Os01g57900 Pentatricopeptide repeat-containing protein At1g69290... 0.02 OrthoFinder output from all 47 species
MA_46631g0010 No alias Pentatricopeptide repeat-containing protein At1g69290... 0.03 OrthoFinder output from all 47 species
MA_743669g0010 No alias Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
MA_90791g0010 No alias Pentatricopeptide repeat-containing protein At4g02750... 0.02 OrthoFinder output from all 47 species
Ore_g33799 CRM3, HCF152 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Smo105853 No alias Pentatricopeptide repeat-containing protein At3g09650,... 0.03 OrthoFinder output from all 47 species
Solyc01g088750.3.1 Solyc01g088750 Pentatricopeptide repeat-containing protein At1g69290... 0.06 OrthoFinder output from all 47 species
Solyc04g008410.3.1 Solyc04g008410 Pentatricopeptide repeat-containing protein At1g03100,... 0.03 OrthoFinder output from all 47 species
Zm00001e019596_P001 Zm00001e019596 Pentatricopeptide repeat-containing protein At1g69290... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0003727 single-stranded RNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
BP GO:0006084 acetyl-CoA metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006304 DNA modification IEP HCCA
BP GO:0006305 DNA alkylation IEP HCCA
BP GO:0006306 DNA methylation IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006346 DNA methylation-dependent heterochromatin formation IEP HCCA
BP GO:0006349 regulation of gene expression by genomic imprinting IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006637 acyl-CoA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0009616 RNAi-mediated antiviral immune response IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0009910 negative regulation of flower development IEP HCCA
BP GO:0010048 vernalization response IEP HCCA
BP GO:0010050 vegetative phase change IEP HCCA
BP GO:0010267 ta-siRNA processing IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway IEP HCCA
BP GO:0031047 RNA-mediated gene silencing IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
MF GO:0034046 poly(G) binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0035194 RNA-mediated post-transcriptional gene silencing IEP HCCA
BP GO:0035383 thioester metabolic process IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044728 DNA methylation or demethylation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0048519 negative regulation of biological process IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048581 negative regulation of post-embryonic development IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0051093 negative regulation of developmental process IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
BP GO:0051241 negative regulation of multicellular organismal process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
MF GO:0070717 poly-purine tract binding IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:0140718 facultative heterochromatin formation IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA
BP GO:2000242 negative regulation of reproductive process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 260 280
IPR002885 Pentatricopeptide_repeat 389 433
IPR002885 Pentatricopeptide_repeat 476 519
No external refs found!