Description : Zinc finger C-x8-C-x5-C-x3-H type family protein
Gene families : OG0003489 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003489_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
GSVIVT01011819001 | No alias | RNA biosynthesis.transcriptional activation.C3H zinc... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01030969001 | No alias | RNA biosynthesis.transcriptional activation.C3H zinc... | 0.1 | OrthoFinder output from all 47 species | |
LOC_Os01g45730.1 | LOC_Os01g45730 | C3H zinc finger transcription factor | 0.08 | OrthoFinder output from all 47 species | |
Pir_g54698 | No alias | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Solyc05g008670.3.1 | Solyc05g008670 | C3H zinc finger transcription factor | 0.06 | OrthoFinder output from all 47 species | |
Spa_g48187 | No alias | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | ISS | Interproscan |
MF | GO:0003700 | DNA-binding transcription factor activity | ISS | Interproscan |
CC | GO:0005634 | nucleus | ISM | Interproscan |
BP | GO:0006355 | regulation of DNA-templated transcription | TAS | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000271 | polysaccharide biosynthetic process | IEP | HCCA |
MF | GO:0004601 | peroxidase activity | IEP | HCCA |
MF | GO:0005507 | copper ion binding | IEP | HCCA |
CC | GO:0005886 | plasma membrane | IEP | HCCA |
BP | GO:0005975 | carbohydrate metabolic process | IEP | HCCA |
BP | GO:0005976 | polysaccharide metabolic process | IEP | HCCA |
BP | GO:0009059 | macromolecule biosynthetic process | IEP | HCCA |
CC | GO:0009505 | plant-type cell wall | IEP | HCCA |
BP | GO:0009832 | plant-type cell wall biogenesis | IEP | HCCA |
BP | GO:0009834 | plant-type secondary cell wall biogenesis | IEP | HCCA |
BP | GO:0009987 | cellular process | IEP | HCCA |
BP | GO:0010383 | cell wall polysaccharide metabolic process | IEP | HCCA |
BP | GO:0010410 | hemicellulose metabolic process | IEP | HCCA |
BP | GO:0010413 | glucuronoxylan metabolic process | IEP | HCCA |
BP | GO:0016051 | carbohydrate biosynthetic process | IEP | HCCA |
MF | GO:0016209 | antioxidant activity | IEP | HCCA |
MF | GO:0016684 | oxidoreductase activity, acting on peroxide as acceptor | IEP | HCCA |
CC | GO:0031225 | obsolete anchored component of membrane | IEP | HCCA |
BP | GO:0033692 | cellular polysaccharide biosynthetic process | IEP | HCCA |
BP | GO:0034637 | cellular carbohydrate biosynthetic process | IEP | HCCA |
BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0042546 | cell wall biogenesis | IEP | HCCA |
BP | GO:0044036 | cell wall macromolecule metabolic process | IEP | HCCA |
BP | GO:0044038 | cell wall macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0044085 | cellular component biogenesis | IEP | HCCA |
BP | GO:0044249 | cellular biosynthetic process | IEP | HCCA |
BP | GO:0044260 | cellular macromolecule metabolic process | IEP | HCCA |
BP | GO:0044262 | cellular carbohydrate metabolic process | IEP | HCCA |
BP | GO:0044264 | cellular polysaccharide metabolic process | IEP | HCCA |
BP | GO:0045491 | xylan metabolic process | IEP | HCCA |
BP | GO:0045492 | xylan biosynthetic process | IEP | HCCA |
BP | GO:0070589 | cellular component macromolecule biosynthetic process | IEP | HCCA |
BP | GO:0070592 | cell wall polysaccharide biosynthetic process | IEP | HCCA |
BP | GO:0071669 | plant-type cell wall organization or biogenesis | IEP | HCCA |
BP | GO:1901576 | organic substance biosynthetic process | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000571 | Znf_CCCH | 224 | 248 |
No external refs found! |