1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G67230

AT1G67230 (LINC1)


Aliases : LINC1

Description : little nuclei1


Gene families : OG0002096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002096_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G67230

Target Alias Description ECC score Gene Family Method Actions
Adi_g018491 LINC3 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Aev_g06792 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Ala_g08422 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Als_g29067 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Aob_g07969 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Aop_g06258 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Aspi01Gene69882.t1 LINC2, Aspi01Gene69882 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.07G023500.1 LINC2, Ceric.07G023500 nuclear lamina lamin-like protein *(CRWN) & original... 0.05 OrthoFinder output from all 47 species
Ceric.31G070800.1 LINC2, Ceric.31G070800 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g09858 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01011972001 LINC3 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.05 OrthoFinder output from all 47 species
GSVIVT01031076001 LINC1 Cytoskeleton.cytoskeleton-nucleoskeleton linking.nuclear... 0.04 OrthoFinder output from all 47 species
LOC_Os01g56140.1 LINC4, LOC_Os01g56140 CRWN nuclear lamina lamin-like protein 0.06 OrthoFinder output from all 47 species
LOC_Os02g48010.1 LINC1, LOC_Os02g48010 CRWN nuclear lamina lamin-like protein 0.04 OrthoFinder output from all 47 species
Len_g44504 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g03466 LINC3 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
MA_31023g0010 LINC4 CRWN nuclear lamina lamin-like protein 0.03 OrthoFinder output from all 47 species
Mp3g21160.1 LINC2 CRWN nuclear lamina lamin-like protein 0.05 OrthoFinder output from all 47 species
Msp_g26620 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Ore_g19679 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Pir_g46798 LINC4 nuclear lamina lamin-like protein *(CRWN) & original... 0.04 OrthoFinder output from all 47 species
Ppi_g14315 LINC2 nuclear lamina lamin-like protein *(CRWN) & original... 0.03 OrthoFinder output from all 47 species
Sam_g14580 No alias nuclear lamina lamin-like protein *(CRWN) & original... 0.02 OrthoFinder output from all 47 species
Solyc02g089800.3.1 LINC1, Solyc02g089800 CRWN nuclear lamina lamin-like protein 0.03 OrthoFinder output from all 47 species
Solyc02g091960.4.1 LINC4, Solyc02g091960 CRWN nuclear lamina lamin-like protein 0.05 OrthoFinder output from all 47 species
Solyc03g045050.4.1 LINC1, Solyc03g045050 CRWN nuclear lamina lamin-like protein 0.03 OrthoFinder output from all 47 species
Zm00001e019705_P002 LINC4, Zm00001e019705 CRWN nuclear lamina lamin-like protein 0.04 OrthoFinder output from all 47 species
Zm00001e023357_P001 LINC1, Zm00001e023357 CRWN nuclear lamina lamin-like protein 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005652 nuclear lamina IDA Interproscan
CC GO:0005829 cytosol IDA Interproscan
BP GO:0006997 nucleus organization IMP Interproscan
BP GO:0006997 nucleus organization IGI Interproscan
CC GO:0034399 nuclear periphery IDA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000904 cell morphogenesis involved in differentiation IEP HCCA
MF GO:0004084 branched-chain-amino-acid transaminase activity IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005744 TIM23 mitochondrial import inner membrane translocase complex IEP HCCA
CC GO:0005819 spindle IEP HCCA
CC GO:0005911 cell-cell junction IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
MF GO:0008320 protein transmembrane transporter activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
CC GO:0009506 plasmodesma IEP HCCA
CC GO:0009524 phragmoplast IEP HCCA
BP GO:0009846 pollen germination IEP HCCA
BP GO:0009886 post-embryonic animal morphogenesis IEP HCCA
BP GO:0009909 regulation of flower development IEP HCCA
BP GO:0010099 regulation of photomorphogenesis IEP HCCA
MF GO:0015450 protein-transporting ATPase activity IEP HCCA
MF GO:0015462 ABC-type protein transporter activity IEP HCCA
BP GO:0016567 protein ubiquitination IEP HCCA
BP GO:0016569 obsolete covalent chromatin modification IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
MF GO:0022884 macromolecule transmembrane transporter activity IEP HCCA
CC GO:0030054 cell junction IEP HCCA
BP GO:0032446 protein modification by small protein conjugation IEP HCCA
BP GO:0033365 protein localization to organelle IEP HCCA
BP GO:0042752 regulation of circadian rhythm IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
MF GO:0043424 protein histidine kinase binding IEP HCCA
BP GO:0046686 response to cadmium ion IEP HCCA
MF GO:0046982 protein heterodimerization activity IEP HCCA
BP GO:0048439 flower morphogenesis IEP HCCA
BP GO:0048507 meristem development IEP HCCA
BP GO:0048580 regulation of post-embryonic development IEP HCCA
BP GO:0048609 multicellular organismal reproductive process IEP HCCA
BP GO:0048831 regulation of shoot system development IEP HCCA
BP GO:0051239 regulation of multicellular organismal process IEP HCCA
CC GO:0070161 anchoring junction IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0072594 establishment of protein localization to organelle IEP HCCA
BP GO:0080001 mucilage extrusion from seed coat IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0140318 protein transporter activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
BP GO:2000026 regulation of multicellular organismal development IEP HCCA
BP GO:2000030 regulation of response to red or far red light IEP HCCA
BP GO:2000241 regulation of reproductive process IEP HCCA

No InterPro domains available for this sequence

No external refs found!