AT1G66140 (ZFP4)

Aliases : ZFP4

Description : zinc finger protein 4

Gene families : OG0000096 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000096_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G66140

Target	Alias	Description	ECC score	Gene Family Method
AT1G67030	ZFP6	zinc finger protein 6	0.07	OrthoFinder output from all 47 species
AT1G68360	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.05	OrthoFinder output from all 47 species
AT3G09290	TAC1	telomerase activator1	0.03	OrthoFinder output from all 47 species
AT5G06070	RAB, RBE	C2H2 and C2HC zinc fingers superfamily protein	0.04	OrthoFinder output from all 47 species
AT5G25160	ZFP3	zinc finger protein 3	0.03	OrthoFinder output from all 47 species
Ala_g18616	No alias	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene18056.t1	Aspi01Gene18056	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Aspi01Gene56786.t1	Aspi01Gene56786	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Aspi01Gene67787.t2	ZFP6, Aspi01Gene67787	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Azfi_s0144.g051613	No alias	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Ceric.32G009700.1	Ceric.32G009700	C2H2 subclass ZFP transcription factor & original...	0.02	OrthoFinder output from all 47 species
Ceric.39G025200.1	JAG, Ceric.39G025200	transcriptional regulator *(JAG/NUB) & original...	0.03	OrthoFinder output from all 47 species
Dac_g38400	GIS2	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g11125	No alias	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ehy_g30781	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01016493001	RAB, RBE	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.06	OrthoFinder output from all 47 species
GSVIVT01031007001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	OrthoFinder output from all 47 species
LOC_Os01g04120.1	LOC_Os01g04120	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os05g20930.1	RAB, RBE, LOC_Os05g20930	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
LOC_Os09g27320.1	ZFP8, LOC_Os09g27320	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
LOC_Os09g38610.1	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
MA_10430024g0010	No alias	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
MA_2800g0010	No alias	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
MA_424g0010	No alias	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
MA_54742g0010	ZFP6	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Nbi_g04234	ZFP10, ATZFP10	C2H2 subclass ZFP transcription factor & original...	0.03	OrthoFinder output from all 47 species
Ore_g43347	No alias	C2H2 subclass ZFP transcription factor & original...	0.05	OrthoFinder output from all 47 species
Pir_g23397	ZFP1, ATZFP1	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Pnu_g11110	No alias	C2H2 subclass ZFP transcription factor & original...	0.04	OrthoFinder output from all 47 species
Pp3c3_5040V3.1	Pp3c3_5040	C2H2 and C2HC zinc fingers superfamily protein	0.01	OrthoFinder output from all 47 species
Pp3c6_19230V3.1	Pp3c6_19230	C2H2 and C2HC zinc fingers superfamily protein	0.01	OrthoFinder output from all 47 species
Solyc01g107430.2.1	ZFP7, Solyc01g107430	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Solyc03g117070.1.1	Solyc03g117070	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Solyc05g009180.1.1	Solyc05g009180	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Solyc05g009380.4.1	JAG, Solyc05g009380	Zinc finger protein JAGGED OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species
Solyc06g061160.1.1	Solyc06g061160	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Solyc06g068390.1.1	Solyc06g068390	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Solyc09g011120.1.1	ZFP10, ATZFP10,...	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Solyc09g066250.1.1	Solyc09g066250	no hits & (original description: none)	0.05	OrthoFinder output from all 47 species
Solyc09g089590.1.1	SUP, FLO10,...	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Solyc10g049870.1.1	ZFP7, Solyc10g049870	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Solyc10g078970.1.1	GIS2, Solyc10g078970	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e009854_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.05	OrthoFinder output from all 47 species
Zm00001e010687_P001	ZFP7, Zm00001e010687	C2H2 zinc finger transcription factor	0.07	OrthoFinder output from all 47 species
Zm00001e011910_P001	Zm00001e011910	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e016256_P001	Zm00001e016256	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e032639_P001	ZFP10, ATZFP10,...	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e034883_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.02	OrthoFinder output from all 47 species
Zm00001e035448_P001	ZFP7, Zm00001e035448	C2H2 zinc finger transcription factor	0.04	OrthoFinder output from all 47 species
Zm00001e036220_P001	ZFP8, Zm00001e036220	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e036816_P001	ZFP6, Zm00001e036816	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e037944_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species
Zm00001e040940_P001	ATZFP2, ZFP2,...	C2H2 zinc finger transcription factor	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
BP	GO:0006650	glycerophospholipid metabolic process	IEP	HCCA
BP	GO:0006661	phosphatidylinositol biosynthetic process	IEP	HCCA
BP	GO:0009723	response to ethylene	IEP	HCCA
BP	GO:0009739	response to gibberellin	IEP	HCCA
BP	GO:0009751	response to salicylic acid	IEP	HCCA
BP	GO:0009753	response to jasmonic acid	IEP	HCCA
BP	GO:0010033	response to organic substance	IEP	HCCA
BP	GO:0014070	response to organic cyclic compound	IEP	HCCA
BP	GO:0045017	glycerolipid biosynthetic process	IEP	HCCA
BP	GO:0046474	glycerophospholipid biosynthetic process	IEP	HCCA
BP	GO:0046486	glycerolipid metabolic process	IEP	HCCA
BP	GO:0046488	phosphatidylinositol metabolic process	IEP	HCCA
BP	GO:0070542	response to fatty acid	IEP	HCCA
BP	GO:1901700	response to oxygen-containing compound	IEP	HCCA

No InterPro domains available for this sequence

External Links

No external refs found!

AT1G66140 (ZFP4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation