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  5. AT1G65920

AT1G65920


Description : Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain


Gene families : OG0000592 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000592_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G65920
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
Aev_g14846 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aspi01Gene04436.t1 Aspi01Gene04436 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene52568.t2 Aspi01Gene52568 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene65114.t1 Aspi01Gene65114 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.09G040000.1 Ceric.09G040000 not classified & original description: pacid=50586756... 0.02 OrthoFinder output from all 47 species
Ceric.25G075400.1 Ceric.25G075400 not classified & original description: pacid=50594355... 0.03 OrthoFinder output from all 47 species
Dac_g11534 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01037259001 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
LOC_Os05g01610.1 PRAF1, LOC_Os05g01610 PH, RCC1 and FYVE domains-containing protein 1... 0.05 OrthoFinder output from all 47 species
Len_g14356 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Lfl_g05030 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g15592 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g27149 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0122.g021453 No alias not classified & original description: CDS=1695-2003 0.03 OrthoFinder output from all 47 species
Smo112120 No alias PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Solyc11g065120.3.1 Solyc11g065120 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species
Solyc12g099740.2.1 Solyc12g099740 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Zm00001e007139_P001 Zm00001e007139 PH, RCC1 and FYVE domains-containing protein 1... 0.04 OrthoFinder output from all 47 species
Zm00001e015467_P001 Zm00001e015467 PH, RCC1 and FYVE domains-containing protein 1... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005773 vacuole IDA Interproscan
CC GO:0005794 Golgi apparatus ISM Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001558 regulation of cell growth IEP HCCA
CC GO:0005768 endosome IEP HCCA
CC GO:0005802 trans-Golgi network IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006261 DNA-templated DNA replication IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0007346 regulation of mitotic cell cycle IEP HCCA
BP GO:0008283 cell population proliferation IEP HCCA
BP GO:0009888 tissue development IEP HCCA
BP GO:0010090 trichome morphogenesis IEP HCCA
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP HCCA
BP GO:0010498 proteasomal protein catabolic process IEP HCCA
BP GO:0010564 regulation of cell cycle process IEP HCCA
MF GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity IEP HCCA
MF GO:0019207 kinase regulator activity IEP HCCA
MF GO:0019887 protein kinase regulator activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022603 regulation of anatomical structure morphogenesis IEP HCCA
BP GO:0022604 regulation of cell morphogenesis IEP HCCA
BP GO:0030163 protein catabolic process IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
CC GO:0031410 cytoplasmic vesicle IEP HCCA
CC GO:0031982 vesicle IEP HCCA
CC GO:0031984 organelle subcompartment IEP HCCA
BP GO:0035966 response to topologically incorrect protein IEP HCCA
BP GO:0040008 regulation of growth IEP HCCA
BP GO:0042023 DNA endoreduplication IEP HCCA
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0043248 proteasome assembly IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044786 cell cycle DNA replication IEP HCCA
BP GO:0048582 positive regulation of post-embryonic development IEP HCCA
BP GO:0048638 regulation of developmental growth IEP HCCA
BP GO:0051094 positive regulation of developmental process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051240 positive regulation of multicellular organismal process IEP HCCA
BP GO:0051302 regulation of cell division IEP HCCA
BP GO:0051510 regulation of unidimensional cell growth IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
BP GO:0051788 response to misfolded protein IEP HCCA
CC GO:0097708 intracellular vesicle IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
CC GO:0098791 Golgi apparatus subcompartment IEP HCCA
BP GO:1901987 regulation of cell cycle phase transition IEP HCCA
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP HCCA
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP HCCA
BP GO:2000038 regulation of stomatal complex development IEP HCCA
BP GO:2000123 positive regulation of stomatal complex development IEP HCCA
InterPro domains Description Start Stop
IPR000408 Reg_chr_condens 311 359
IPR000408 Reg_chr_condens 529 578
IPR000408 Reg_chr_condens 413 462
IPR000408 Reg_chr_condens 478 526
IPR000408 Reg_chr_condens 582 630
IPR000306 Znf_FYVE 640 699
IPR001849 PH_domain 17 123
IPR027988 BRX_N 839 871
IPR013591 Brevis_radix_dom 948 1002
No external refs found!