AT1G65570

Description : Pectin lyase-like superfamily protein

Gene families : OG0008809 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008809_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G65570
Cluster	HCCA: Cluster_111

Target	Alias	Description	ECC score	Gene Family Method
AT1G05650	No alias	Pectin lyase-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT1G05660	No alias	Pectin lyase-like superfamily protein	0.04	OrthoFinder output from all 47 species
AT2G43860	No alias	Pectin lyase-like superfamily protein	0.06	OrthoFinder output from all 47 species
AT2G43880	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT2G43890	No alias	Pectin lyase-like superfamily protein	0.03	OrthoFinder output from all 47 species
AT3G59850	No alias	Pectin lyase-like superfamily protein	0.05	OrthoFinder output from all 47 species
GSVIVT01038241001	No alias	Polygalacturonase OS=Prunus persica	0.03	OrthoFinder output from all 47 species
LOC_Os01g43490.1	LOC_Os01g43490	Polygalacturonase OS=Prunus persica...	0.03	OrthoFinder output from all 47 species
Solyc02g067630.3.1	Solyc02g067630	Polygalacturonase OS=Prunus persica...	0.03	OrthoFinder output from all 47 species
Solyc02g067640.3.1	Solyc02g067640	Polygalacturonase OS=Prunus persica...	0.03	OrthoFinder output from all 47 species
Solyc08g014540.1.1	Solyc08g014540	Polygalacturonase OS=Prunus persica...	0.07	OrthoFinder output from all 47 species
Solyc12g019120.2.1	Solyc12g019120	Polygalacturonase OS=Prunus persica...	0.07	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005911	cell-cell junction	None	Extended
BP	GO:0005975	carbohydrate metabolic process	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
CC	GO:0009506	plasmodesma	IDA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
CC	GO:0030054	cell junction	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0070161	anchoring junction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	HCCA
BP	GO:0010054	trichoblast differentiation	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
MF	GO:0030599	pectinesterase activity	IEP	HCCA
BP	GO:0048829	root cap development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000743	Glyco_hydro_28	58	384

External Links

No external refs found!