AT1G65070

Description : DNA mismatch repair protein MutS, type 2

Gene families : OG0002233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002233_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G65070
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00265580	evm_27.TU.AmTr_v1...	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana	0.04	OrthoFinder output from all 47 species
AMTR_s00018p00168540	evm_27.TU.AmTr_v1...	DNA mismatch repair protein MSH1, mitochondrial...	0.03	OrthoFinder output from all 47 species
Ala_g38274	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0068.g036437	No alias	not classified & original description: CDS=249-2714	0.03	OrthoFinder output from all 47 species
Cba_g25384	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.34G068900.1	Ceric.34G068900	not classified & original description: pacid=50624175...	0.04	OrthoFinder output from all 47 species
Dac_g12574	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g11218	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Gb_24817	No alias	DNA mismatch repair protein MSH2 OS=Arabidopsis thaliana...	0.03	OrthoFinder output from all 47 species
LOC_Os10g36530.1	LOC_Os10g36530	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.06	OrthoFinder output from all 47 species
Len_g57835	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Mp2g11550.1	No alias	DNA mismatch repair protein MSH1, mitochondrial...	0.04	OrthoFinder output from all 47 species
Msp_g14305	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g26063	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19502	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g16765	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g59488	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g15793	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0218.g026113	No alias	not classified & original description: CDS=1-2874	0.03	OrthoFinder output from all 47 species
Sam_g13786	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g078390.3.1	Solyc02g078390	DNA mismatch repair protein MSH1, mitochondrial...	0.02	OrthoFinder output from all 47 species
Zm00001e006512_P001	Zm00001e006512	DNA mismatch repair protein MSH3 OS=Arabidopsis thaliana...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003684	damaged DNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	ISS	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006721	terpenoid metabolic process	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
CC	GO:0009507	chloroplast	IEP	HCCA
CC	GO:0009536	plastid	IEP	HCCA
BP	GO:0009657	plastid organization	IEP	HCCA
BP	GO:0009662	etioplast organization	IEP	HCCA
BP	GO:0016108	tetraterpenoid metabolic process	IEP	HCCA
BP	GO:0016109	tetraterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016114	terpenoid biosynthetic process	IEP	HCCA
BP	GO:0016116	carotenoid metabolic process	IEP	HCCA
BP	GO:0016117	carotenoid biosynthetic process	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0042440	pigment metabolic process	IEP	HCCA
BP	GO:0046148	pigment biosynthetic process	IEP	HCCA
MF	GO:0046608	carotenoid isomerase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000432	DNA_mismatch_repair_MutS_C	399	582

External Links

No external refs found!

AT1G65070

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation