AT1G64740 (TUA1)

Aliases : TUA1

Description : alpha-1 tubulin

Gene families : OG0000233 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000233_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G64740

Target	Alias	Description	ECC score	Gene Family Method
AT5G19770	TUA3	tubulin alpha-3	0.06	OrthoFinder output from all 47 species
Adi_g017319	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Adi_g088318	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Ala_g04079	TUA3	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ala_g16980	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ala_g31827	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Als_g06169	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.05	OrthoFinder output from all 47 species
Als_g28551	TUA3	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Als_g38600	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Aob_g21186	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Aop_g27000	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.05	OrthoFinder output from all 47 species
Aop_g60213	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Aop_g62084	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Aop_g62975	TUA3	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Aop_g70531	TUA6	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Aspi01Gene23321.t1	TOR2, TUA4,...	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Azfi_s0012.g012907	TUA3	not classified & original description: CDS=210-746	0.03	OrthoFinder output from all 47 species
Cba_g07542	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Cba_g15077	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Cba_g15078	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Ceric.06G074000.1	TUA6, Ceric.06G074000	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.05	OrthoFinder output from all 47 species
Ceric.24G052000.1	TOR2, TUA4,...	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Ceric.33G063200.1	TOR2, TUA4,...	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ceric.37G058200.1	TUA3, Ceric.37G058200	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Dac_g12327	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Dac_g14622	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Dac_g22398	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Dac_g26410	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Dac_g35651	TUA3	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Dcu_g22393	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.01	OrthoFinder output from all 47 species
Dde_g08800	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Dde_g26003	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
GSVIVT01009258001	TOR2, TUA4	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
GSVIVT01033415001	TUA3	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.08	OrthoFinder output from all 47 species
Gb_10484	TUA3	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.02	OrthoFinder output from all 47 species
Gb_29712	TUA3	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.02	OrthoFinder output from all 47 species
LOC_Os03g51600.1	TOR2, TUA4,...	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.02	OrthoFinder output from all 47 species
LOC_Os07g38730.1	TUA3, LOC_Os07g38730	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.03	OrthoFinder output from all 47 species
LOC_Os11g14220.1	TUA6, LOC_Os11g14220	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.03	OrthoFinder output from all 47 species
Len_g12228	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Len_g26529	TUA6	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Lfl_g23976	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
MA_184192g0010	TOR2, TUA4	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.05	OrthoFinder output from all 47 species
MA_5963g0010	TUA3	Tubulin alpha-2 chain OS=Eleusine indica...	0.03	OrthoFinder output from all 47 species
MA_93486g0010	TUA3	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.03	OrthoFinder output from all 47 species
Mp4g00550.1	TUA3	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.03	OrthoFinder output from all 47 species
Msp_g17277	TUA6	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Msp_g24914	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Msp_g36320	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Nbi_g10101	TUA3	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ore_g03977	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Ore_g28972	TUA3	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Pir_g03063	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Pnu_g15159	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Pp3c11_10370V3.1	TOR2, TUA4, Pp3c11_10370	tubulin alpha-2 chain	0.02	OrthoFinder output from all 47 species
Ppi_g11595	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ppi_g14945	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Ppi_g24737	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Sam_g09431	No alias	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Sam_g16657	No alias	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Sam_g16658	No alias	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.02	OrthoFinder output from all 47 species
Smo227365	TOR2, TUA4	Cytoskeleton.microtubular network.alpha-beta-Tubulin...	0.04	OrthoFinder output from all 47 species
Smo420969	TOR2, TUA4	Tubulin alpha-1 chain OS=Anemia phyllitidis	0.01	OrthoFinder output from all 47 species
Solyc02g091870.3.1	TUA6, Solyc02g091870	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.04	OrthoFinder output from all 47 species
Spa_g04259	TOR2, TUA4	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g19059	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.03	OrthoFinder output from all 47 species
Tin_g21555	TOR2, TUA4	alpha-Tubulin component *(TUA) of alpha-beta-Tubulin...	0.05	OrthoFinder output from all 47 species
Zm00001e010608_P001	TUA3, Zm00001e010608	component alpha-Tubulin of alpha-beta-Tubulin heterodimer	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005200	structural constituent of cytoskeleton	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
CC	GO:0005856	cytoskeleton	None	Extended
CC	GO:0005886	plasma membrane	IDA	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005996	monosaccharide metabolic process	None	Extended
BP	GO:0006006	glucose metabolic process	None	Extended
BP	GO:0006094	gluconeogenesis	RCA	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006996	organelle organization	None	Extended
BP	GO:0007010	cytoskeleton organization	RCA	Interproscan
BP	GO:0007017	microtubule-based process	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010498	proteasomal protein catabolic process	RCA	Interproscan
CC	GO:0015630	microtubule cytoskeleton	ISS	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0019318	hexose metabolic process	None	Extended
BP	GO:0019319	hexose biosynthetic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0030163	protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0046364	monosaccharide biosynthetic process	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002682	regulation of immune system process	IEP	HCCA
BP	GO:0002831	regulation of response to biotic stimulus	IEP	HCCA
BP	GO:0006605	protein targeting	IEP	HCCA
BP	GO:0006612	protein targeting to membrane	IEP	HCCA
BP	GO:0006811	monoatomic ion transport	IEP	HCCA
BP	GO:0006820	monoatomic anion transport	IEP	HCCA
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0006862	nucleotide transport	IEP	HCCA
BP	GO:0006865	amino acid transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0010363	regulation of plant-type hypersensitive response	IEP	HCCA
BP	GO:0010941	regulation of cell death	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0015748	organophosphate ester transport	IEP	HCCA
BP	GO:0015802	basic amino acid transport	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
BP	GO:0015931	nucleobase-containing compound transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
BP	GO:0031347	regulation of defense response	IEP	HCCA
BP	GO:0032101	regulation of response to external stimulus	IEP	HCCA
BP	GO:0032879	regulation of localization	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
BP	GO:0043067	regulation of programmed cell death	IEP	HCCA
BP	GO:0043069	negative regulation of programmed cell death	IEP	HCCA
BP	GO:0043090	amino acid import	IEP	HCCA
BP	GO:0043269	regulation of monoatomic ion transport	IEP	HCCA
BP	GO:0043903	regulation of biological process involved in symbiotic interaction	IEP	HCCA
BP	GO:0045088	regulation of innate immune response	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0048193	Golgi vesicle transport	IEP	HCCA
BP	GO:0048519	negative regulation of biological process	IEP	HCCA
BP	GO:0048523	negative regulation of cellular process	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0050776	regulation of immune response	IEP	HCCA
BP	GO:0051049	regulation of transport	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0060548	negative regulation of cell death	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
BP	GO:0080135	regulation of cellular response to stress	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003008	Tubulin_FtsZ_GTPase	3	213
IPR018316	Tubulin/FtsZ_2-layer-sand-dom	263	392

External Links

No external refs found!

AT1G64740 (TUA1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation