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AT1G62350


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG0001426 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001426_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G62350

Target Alias Description ECC score Gene Family Method Actions
Adi_g086836 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g00323 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Aop_g29953 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0371.g067119 No alias not classified & original description: CDS=52-882 0.02 OrthoFinder output from all 47 species
Dcu_g11564 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Lfl_g00648 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g18001 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g20138 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Solyc09g092360.3.1 Solyc09g092360 THA8 plastidial RNA splicing factor 0.03 OrthoFinder output from all 47 species
Spa_g08056 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Tin_g04416 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Tin_g04429 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000175 3'-5'-exoribonuclease activity IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0004532 exoribonuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006626 protein targeting to mitochondrion IEP HCCA
BP GO:0006839 mitochondrial transport IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008408 3'-5' exonuclease activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP HCCA
MF GO:0016896 exoribonuclease activity, producing 5'-phosphomonoesters IEP HCCA
BP GO:0051604 protein maturation IEP HCCA
BP GO:0070585 protein localization to mitochondrion IEP HCCA
BP GO:0072655 establishment of protein localization to mitochondrion IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 108 135
IPR002885 Pentatricopeptide_repeat 74 100
No external refs found!