AT1G62310

Description : transcription factor jumonji (jmjC) domain-containing protein

Gene families : OG0000328 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000328_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G62310

Target	Alias	Description	ECC score	Gene Family Method
Adi_g010141	No alias	histone demethylase *(KDM3) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g086369	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g20293	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene42684.t1	Aspi01Gene42684	histone demethylase *(KDM3) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.21G018000.1	Ceric.21G018000	histone demethylase *(KDM3) & original description:...	0.03	OrthoFinder output from all 47 species
LOC_Os07g37140.1	LOC_Os07g37140	histone demethylase (KDM3)	0.03	OrthoFinder output from all 47 species
MA_103030g0010	No alias	histone demethylase (KDM3). transcription factor (JUMONJI)	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0021.g008328	No alias	histone demethylase *(KDM3) & original description: CDS=500-2434	0.02	OrthoFinder output from all 47 species
Sam_g29690	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g40489	No alias	histone demethylase *(KDM3) & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	HCCA
CC	GO:0005622	intracellular anatomical structure	IEP	HCCA
BP	GO:0006470	protein dephosphorylation	IEP	HCCA
MF	GO:0008420	RNA polymerase II CTD heptapeptide repeat phosphatase activity	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003347	JmjC_dom	743	846
IPR018866	Znf-4CXXC_R1	204	275

External Links

No external refs found!

AT1G62310

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation