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AT1G61870 (PPR336)


Aliases : PPR336

Description : pentatricopeptide repeat 336


Gene families : OG0001250 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001250_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G61870

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018992001 No alias Pentatricopeptide repeat-containing protein At4g36680,... 0.04 OrthoFinder output from all 47 species
Solyc02g079830.1.1 Solyc02g079830 Pentatricopeptide repeat-containing protein At3g13160,... 0.04 OrthoFinder output from all 47 species
Solyc10g005280.1.1 PPR336, Solyc10g005280 PPR-type mitochondrial ribosome regulatory protein (PPR336) 0.06 OrthoFinder output from all 47 species
Zm00001e015190_P001 Zm00001e015190 Pentatricopeptide repeat-containing protein At2g18520,... 0.05 OrthoFinder output from all 47 species
Zm00001e028938_P001 Zm00001e028938 Pentatricopeptide repeat-containing protein At1g55890,... 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IDA Interproscan
CC GO:0005739 mitochondrion ISM Interproscan
CC GO:0016020 membrane IDA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
BP GO:0000741 karyogamy IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
CC GO:0005654 nucleoplasm IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009553 embryo sac development IEP HCCA
BP GO:0009555 pollen development IEP HCCA
BP GO:0009560 embryo sac egg cell differentiation IEP HCCA
BP GO:0009566 fertilization IEP HCCA
BP GO:0009567 double fertilization forming a zygote and endosperm IEP HCCA
CC GO:0015030 Cajal body IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
BP GO:0016572 obsolete histone phosphorylation IEP HCCA
CC GO:0016604 nuclear body IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0048229 gametophyte development IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
BP GO:0051567 histone H3-K9 methylation IEP HCCA
BP GO:0061647 histone H3-K9 modification IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 153 179
IPR002885 Pentatricopeptide_repeat 366 391
IPR002885 Pentatricopeptide_repeat 258 287
IPR002885 Pentatricopeptide_repeat 185 232
IPR002885 Pentatricopeptide_repeat 290 339
No external refs found!