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AT1G57800 (VIM5, ORTH3)


Aliases : VIM5, ORTH3

Description : zinc finger (C3HC4-type RING finger) family protein


Gene families : OG0003058 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003058_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G57800
Cluster HCCA: Cluster_61

Target Alias Description ECC score Gene Family Method Actions
Als_g26924 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.02 OrthoFinder output from all 47 species
Lfl_g23711 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species
Ore_g26667 VIM1, ORTH2 regulatory E3 ubiquitin ligase (ORTH/VIM) of... 0.02 OrthoFinder output from all 47 species
Pir_g52214 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Smo418840 ORTH4, VIM4 No description available 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006722 triterpenoid metabolic process IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
BP GO:0016104 triterpenoid biosynthetic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
BP GO:0016125 sterol metabolic process IEP HCCA
BP GO:0016126 sterol biosynthetic process IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0019742 pentacyclic triterpenoid metabolic process IEP HCCA
BP GO:0019745 pentacyclic triterpenoid biosynthetic process IEP HCCA
MF GO:0031559 oxidosqualene cyclase activity IEP HCCA
MF GO:0042299 lupeol synthase activity IEP HCCA
InterPro domains Description Start Stop
IPR003105 SRA_YDG 288 434
IPR018957 Znf_C3HC4_RING-type 141 196
IPR027370 Znf-RING_euk 528 582
No external refs found!