AT1G56210

Description : Heavy metal transport/detoxification superfamily protein

Gene families : OG0000090 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000090_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G56210

Target	Alias	Description	ECC score	Gene Family Method
AT5G37860	No alias	Heavy metal transport/detoxification superfamily protein	0.05	OrthoFinder output from all 47 species
Aev_g35875	NAKR1	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g15521	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g22151	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ala_g26598	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g07856	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g12637	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Als_g31942	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene48596.t1	Aspi01Gene48596	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene58660.t1	Aspi01Gene58660	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.04G056300.1	Ceric.04G056300	not classified & original description: pacid=50631365...	0.03	OrthoFinder output from all 47 species
Dac_g14270	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g22666	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g12983	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g16566	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Len_g20757	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Len_g30584	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g08746	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g37137	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g26776	NAKR1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g09482	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Smo442871	No alias	No description available	0.02	OrthoFinder output from all 47 species
Spa_g04155	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g35651	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e006177_P001	NAKR1, Zm00001e006177	Protein SODIUM POTASSIUM ROOT DEFECTIVE 1 OS=Arabidopsis...	0.05	OrthoFinder output from all 47 species
Zm00001e011765_P002	NAKR2, Zm00001e011765	Protein SODIUM POTASSIUM ROOT DEFECTIVE 2 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e019945_P001	Zm00001e019945	Protein SODIUM POTASSIUM ROOT DEFECTIVE 2 OS=Arabidopsis...	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006479	protein methylation	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008213	protein alkylation	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016570	histone modification	None	Extended
BP	GO:0016571	histone methylation	RCA	Interproscan
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0032259	methylation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0043414	macromolecule methylation	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
MF	GO:0046872	metal ion binding	ISS	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000775	chromosome, centromeric region	IEP	HCCA
CC	GO:0000785	chromatin	IEP	HCCA
BP	GO:0000910	cytokinesis	IEP	HCCA
BP	GO:0000911	cytokinesis by cell plate formation	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
BP	GO:0006270	DNA replication initiation	IEP	HCCA
BP	GO:0006275	regulation of DNA replication	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006346	DNA methylation-dependent heterochromatin formation	IEP	HCCA
BP	GO:0007346	regulation of mitotic cell cycle	IEP	HCCA
BP	GO:0008283	cell population proliferation	IEP	HCCA
BP	GO:0009566	fertilization	IEP	HCCA
BP	GO:0009567	double fertilization forming a zygote and endosperm	IEP	HCCA
BP	GO:0010389	regulation of G2/M transition of mitotic cell cycle	IEP	HCCA
BP	GO:0010564	regulation of cell cycle process	IEP	HCCA
BP	GO:0016458	obsolete gene silencing	IEP	HCCA
BP	GO:0018022	peptidyl-lysine methylation	IEP	HCCA
BP	GO:0018205	peptidyl-lysine modification	IEP	HCCA
BP	GO:0031047	RNA-mediated gene silencing	IEP	HCCA
BP	GO:0031048	RNA-mediated heterochromatin formation	IEP	HCCA
BP	GO:0031507	heterochromatin formation	IEP	HCCA
BP	GO:0034968	histone lysine methylation	IEP	HCCA
BP	GO:0040029	epigenetic regulation of gene expression	IEP	HCCA
BP	GO:0045814	negative regulation of gene expression, epigenetic	IEP	HCCA
BP	GO:0048449	floral organ formation	IEP	HCCA
BP	GO:0048451	petal formation	IEP	HCCA
BP	GO:0048453	sepal formation	IEP	HCCA
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	HCCA
BP	GO:0051052	regulation of DNA metabolic process	IEP	HCCA
BP	GO:0051301	cell division	IEP	HCCA
BP	GO:0051304	chromosome separation	IEP	HCCA
BP	GO:0051307	meiotic chromosome separation	IEP	HCCA
BP	GO:0051567	histone H3-K9 methylation	IEP	HCCA
BP	GO:0051726	regulation of cell cycle	IEP	HCCA
BP	GO:0061647	histone H3-K9 modification	IEP	HCCA
BP	GO:0070828	heterochromatin organization	IEP	HCCA
CC	GO:0098687	chromosomal region	IEP	HCCA
BP	GO:0140718	facultative heterochromatin formation	IEP	HCCA
BP	GO:1901987	regulation of cell cycle phase transition	IEP	HCCA
BP	GO:1901990	regulation of mitotic cell cycle phase transition	IEP	HCCA
BP	GO:1902749	regulation of cell cycle G2/M phase transition	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
BP	GO:1905393	plant organ formation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR006121	HMA_dom	44	97

External Links

No external refs found!

AT1G56210

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation