AT1G56030

Description : RING/U-box superfamily protein

Gene families : OG0000332 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000332_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G56030
Cluster	HCCA: Cluster_34

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00268730	evm_27.TU.AmTr_v1...	Protein modification.phosphorylation.TKL kinase...	0.03	OrthoFinder output from all 47 species
AMTR_s00025p00206220	evm_27.TU.AmTr_v1...	Protein modification.phosphorylation.TKL kinase...	0.03	OrthoFinder output from all 47 species
AMTR_s00146p00101680	evm_27.TU.AmTr_v1...	Protein modification.phosphorylation.TKL kinase...	0.03	OrthoFinder output from all 47 species
AT1G56040	No alias	HEAT/U-box domain-containing protein	0.04	OrthoFinder output from all 47 species
AT5G12000	No alias	Protein kinase protein with adenine nucleotide alpha...	0.03	OrthoFinder output from all 47 species
AT5G35380	No alias	Protein kinase protein with adenine nucleotide alpha...	0.06	OrthoFinder output from all 47 species
Aob_g03556	No alias	EC_2.7 transferase transferring phosphorus-containing...	0.02	OrthoFinder output from all 47 species
Dde_g16373	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01016815001	No alias	Protein modification.phosphorylation.TKL kinase...	0.04	OrthoFinder output from all 47 species
GSVIVT01032261001	No alias	Protein modification.phosphorylation.TKL kinase...	0.04	OrthoFinder output from all 47 species
LOC_Os02g54590.1	LOC_Os02g54590	receptor-like protein kinase (RLCK-IXb)	0.03	OrthoFinder output from all 47 species
LOC_Os06g09230.2	LOC_Os06g09230	receptor-like protein kinase (RLCK-IXb)	0.02	OrthoFinder output from all 47 species
Solyc06g062820.4.1	Solyc06g062820	receptor-like protein kinase (RLCK-IXb)	0.03	OrthoFinder output from all 47 species
Zm00001e023191_P001	Zm00001e023191	receptor-like protein kinase (RLCK-IXb)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000156	phosphorelay response regulator activity	IEP	HCCA
MF	GO:0004044	amidophosphoribosyltransferase activity	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
BP	GO:0006144	purine nucleobase metabolic process	IEP	HCCA
BP	GO:0009112	nucleobase metabolic process	IEP	HCCA
BP	GO:0009113	purine nucleobase biosynthetic process	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0046112	nucleobase biosynthetic process	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	311	368

External Links

No external refs found!

AT1G56030

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation