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AT1G55000


Description : peptidoglycan-binding LysM domain-containing protein


Gene families : OG0005486 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005486_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G55000

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00103p00062900 evm_27.TU.AmTr_v1... F-box protein At1g55000 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Ehy_g22646 No alias substrate adaptor *(InLYP1) of SCF E3 ubiquitin ligase... 0.02 OrthoFinder output from all 47 species
Nbi_g28819 No alias substrate adaptor *(InLYP1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Sam_g06565 No alias substrate adaptor *(InLYP1) of SCF E3 ubiquitin ligase... 0.03 OrthoFinder output from all 47 species
Solyc01g099130.3.1 Solyc01g099130 F-box protein At1g55000 OS=Arabidopsis thaliana... 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0016998 cell wall macromolecule catabolic process ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003993 acid phosphatase activity IEP HCCA
MF GO:0004040 amidase activity IEP HCCA
MF GO:0005310 dicarboxylic acid transmembrane transporter activity IEP HCCA
MF GO:0005342 organic acid transmembrane transporter activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006665 sphingolipid metabolic process IEP HCCA
BP GO:0006787 porphyrin-containing compound catabolic process IEP HCCA
BP GO:0006835 dicarboxylic acid transport IEP HCCA
MF GO:0008514 organic anion transmembrane transporter activity IEP HCCA
BP GO:0009684 indoleacetic acid biosynthetic process IEP HCCA
MF GO:0015139 alpha-ketoglutarate transmembrane transporter activity IEP HCCA
MF GO:0015140 malate transmembrane transporter activity IEP HCCA
MF GO:0015203 polyamine transmembrane transporter activity IEP HCCA
MF GO:0015367 oxoglutarate:malate antiporter activity IEP HCCA
MF GO:0015556 C4-dicarboxylate transmembrane transporter activity IEP HCCA
BP GO:0015740 C4-dicarboxylate transport IEP HCCA
BP GO:0015743 malate transport IEP HCCA
BP GO:0015846 polyamine transport IEP HCCA
BP GO:0015996 chlorophyll catabolic process IEP HCCA
MF GO:0016788 hydrolase activity, acting on ester bonds IEP HCCA
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP HCCA
MF GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides IEP HCCA
BP GO:0030148 sphingolipid biosynthetic process IEP HCCA
MF GO:0030246 carbohydrate binding IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031063 regulation of histone deacetylation IEP HCCA
BP GO:0033015 tetrapyrrole catabolic process IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0043864 indoleacetamide hydrolase activity IEP HCCA
BP GO:0046149 pigment catabolic process IEP HCCA
BP GO:0046519 sphingoid metabolic process IEP HCCA
BP GO:0046520 sphingoid biosynthetic process IEP HCCA
BP GO:0046942 carboxylic acid transport IEP HCCA
MF GO:0046943 carboxylic acid transmembrane transporter activity IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0072330 monocarboxylic acid biosynthetic process IEP HCCA
BP GO:0090311 regulation of protein deacetylation IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR018392 LysM_dom 78 119
IPR001810 F-box_dom 9 37
No external refs found!