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  5. AT1G50980

AT1G50980


Description : F-box/RNI-like/FBD-like domains-containing protein


Gene families : OG0004270 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004270_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G50980
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AT1G05080 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species
AT1G55030 No alias RNI-like superfamily protein 0.08 OrthoFinder output from all 47 species
AT3G10750 No alias FBD domain family 0.06 OrthoFinder output from all 47 species
AT3G49020 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.07 OrthoFinder output from all 47 species
AT3G49030 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.06 OrthoFinder output from all 47 species
AT3G49040 No alias F-box/RNI-like superfamily protein 0.07 OrthoFinder output from all 47 species
AT3G49045 No alias No description available 0.05 OrthoFinder output from all 47 species
AT3G50710 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from all 47 species
AT3G52690 No alias RNI-like superfamily protein 0.06 OrthoFinder output from all 47 species
AT3G56780 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.04 OrthoFinder output from all 47 species
AT4G00160 No alias F-box/RNI-like/FBD-like domains-containing protein 0.06 OrthoFinder output from all 47 species
AT4G00315 No alias F-box/RNI-like/FBD-like domains-containing protein 0.03 OrthoFinder output from all 47 species
AT4G26340 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 OrthoFinder output from all 47 species
AT4G26350 No alias F-box/RNI-like/FBD-like domains-containing protein 0.05 OrthoFinder output from all 47 species
AT5G38570 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G38590 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 OrthoFinder output from all 47 species
AT5G44850 No alias Protein with RNI-like/FBD-like domains 0.05 OrthoFinder output from all 47 species
AT5G50270 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species
AT5G56325 No alias FBD-like domain family protein 0.05 OrthoFinder output from all 47 species
AT5G56370 No alias F-box/RNI-like/FBD-like domains-containing protein 0.02 OrthoFinder output from all 47 species
AT5G56390 No alias F-box/RNI-like/FBD-like domains-containing protein 0.08 OrthoFinder output from all 47 species
AT5G56400 No alias FBD, F-box, Skp2-like and Leucine Rich Repeat domains... 0.09 OrthoFinder output from all 47 species
AT5G56410 No alias Protein with RNI-like/FBD-like domains 0.04 OrthoFinder output from all 47 species
AT5G56430 No alias F-box/FBD-like domains containing protein 0.09 OrthoFinder output from all 47 species
AT5G56452 No alias FBD-like domain family protein 0.08 OrthoFinder output from all 47 species
AT5G56560 No alias FBD, F-box and Leucine Rich Repeat domains containing protein 0.07 OrthoFinder output from all 47 species
AT5G56570 No alias Leucine-rich repeat (LRR) family protein 0.05 OrthoFinder output from all 47 species
AT5G56700 No alias FBD / Leucine Rich Repeat domains containing protein 0.05 OrthoFinder output from all 47 species
AT5G56810 No alias F-box/RNI-like/FBD-like domains-containing protein 0.04 OrthoFinder output from all 47 species
AT5G56820 No alias F-box/RNI-like/FBD-like domains-containing protein 0.01 OrthoFinder output from all 47 species
AT5G60610 No alias F-box/RNI-like superfamily protein 0.04 OrthoFinder output from all 47 species
AT5G62970 No alias Protein with RNI-like/FBD-like domains 0.09 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0016020 membrane IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004022 alcohol dehydrogenase (NAD+) activity IEP HCCA
MF GO:0008146 sulfotransferase activity IEP HCCA
BP GO:0009736 cytokinin-activated signaling pathway IEP HCCA
BP GO:0009808 lignin metabolic process IEP HCCA
BP GO:0009809 lignin biosynthetic process IEP HCCA
MF GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0018455 alcohol dehydrogenase [NAD(P)+] activity IEP HCCA
CC GO:0019005 SCF ubiquitin ligase complex IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
MF GO:0045551 cinnamyl-alcohol dehydrogenase activity IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
MF GO:1990135 flavonoid sulfotransferase activity IEP HCCA
InterPro domains Description Start Stop
IPR006566 FBD 297 341
IPR001810 F-box_dom 33 78
No external refs found!