AT1G50600 (SCL5)

Aliases : SCL5

Description : scarecrow-like 5

Gene families : OG0000550 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000550_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G50600

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00043p00136400	PAT1,...	RNA biosynthesis.transcriptional activation.GRAS...	0.04	OrthoFinder output from all 47 species
AMTR_s00088p00161000	PAT1,...	RNA biosynthesis.transcriptional activation.GRAS...	0.07	OrthoFinder output from all 47 species
AMTR_s00186p00018500	SCL1,...	RNA biosynthesis.transcriptional activation.GRAS...	0.03	OrthoFinder output from all 47 species
Adi_g023686	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g023908	SCL5	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g044375	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g085312	PAT1	GRAS-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Aev_g04153	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g06696	PAT1	GRAS-type transcription factor & original description: none	0.01	OrthoFinder output from all 47 species
Ala_g02325	PAT1	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g08305	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g12229	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ala_g14420	PAT1	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Als_g10196	PAT1	GRAS-type transcription factor & original description: none	0.11	OrthoFinder output from all 47 species
Als_g12263	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g17653	PAT1	GRAS-type transcription factor & original description: none	0.1	OrthoFinder output from all 47 species
Als_g21753	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Als_g37619	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g50028	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g51666	PAT1	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aob_g05233	PAT1	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aop_g01362	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g10570	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g26689	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Aop_g69531	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aspi01Gene36559.t1	PAT1, Aspi01Gene36559	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene38043.t1	PAT1, Aspi01Gene38043	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene64634.t1	PAT1, Aspi01Gene64634	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Azfi_s0084.g039020	PAT1	GRAS-type transcription factor & original description: CDS=1-2502	0.04	OrthoFinder output from all 47 species
Cba_g22814	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ceric.14G087500.1	PAT1, Ceric.14G087500	GRAS-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.26G064200.1	PAT1, Ceric.26G064200	GRAS-type transcription factor & original description:...	0.04	OrthoFinder output from all 47 species
Dac_g00898	PAT1	GRAS-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Dac_g06827	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g16282	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g22968	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dcu_g12997	PAT1	GRAS-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Dde_g03424	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g03441	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Dde_g19426	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g01511	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g02729	PAT1	GRAS-type transcription factor & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g02859	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g08580	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g16560	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
GSVIVT01007007001	SCL21	RNA biosynthesis.transcriptional activation.GRAS...	0.11	OrthoFinder output from all 47 species
GSVIVT01010007001	SCL1	RNA biosynthesis.transcriptional activation.GRAS...	0.05	OrthoFinder output from all 47 species
GSVIVT01014570001	PAT1	RNA biosynthesis.transcriptional activation.GRAS...	0.1	OrthoFinder output from all 47 species
GSVIVT01026482001	SCL1	RNA biosynthesis.transcriptional activation.GRAS...	0.04	OrthoFinder output from all 47 species
GSVIVT01037777001	PAT1	RNA biosynthesis.transcriptional activation.GRAS...	0.1	OrthoFinder output from all 47 species
Gb_30494	SCL1	transcription factor (GRAS)	0.03	OrthoFinder output from all 47 species
Gb_40278	SCL5	transcription factor (GRAS)	0.04	OrthoFinder output from all 47 species
LOC_Os07g36170.2	PAT1, LOC_Os07g36170	transcription factor (GRAS)	0.05	OrthoFinder output from all 47 species
LOC_Os07g39470.1	PAT1, LOC_Os07g39470	transcription factor (GRAS)	0.04	OrthoFinder output from all 47 species
Len_g12269	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Len_g17559	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Len_g20939	PAT1	GRAS-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Lfl_g04060	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g18488	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g28608	PAT1	GRAS-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Lfl_g30488	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_10435549g0050	SCL1	transcription factor (GRAS)	0.04	OrthoFinder output from all 47 species
Msp_g03280	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g06138	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g10420	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g13918	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Msp_g25525	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g27471	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g06251	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g10124	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g19162	PAT1	GRAS-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Ore_g16499	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g10322	PAT1	GRAS-type transcription factor & original description: none	0.07	OrthoFinder output from all 47 species
Pir_g11365	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g24150	SCL13	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g16566	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007649	SCL5	GRAS-type transcription factor & original description: CDS=1-2229	0.04	OrthoFinder output from all 47 species
Solyc04g064550.1.1	SCL1, Solyc04g064550	transcription factor (GRAS)	0.03	OrthoFinder output from all 47 species
Solyc05g054170.4.1	SCL13, Solyc05g054170	transcription factor (GRAS)	0.06	OrthoFinder output from all 47 species
Solyc06g035620.3.1	PAT1, Solyc06g035620	transcription factor (GRAS)	0.11	OrthoFinder output from all 47 species
Solyc07g063940.2.1	PAT1, Solyc07g063940	transcription factor (GRAS)	0.07	OrthoFinder output from all 47 species
Solyc11g012510.3.1	SCL13, Solyc11g012510	transcription factor (GRAS)	0.03	OrthoFinder output from all 47 species
Solyc12g005340.3.1	PAT1, Solyc12g005340	transcription factor (GRAS)	0.11	OrthoFinder output from all 47 species
Spa_g05345	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g07387	PAT1	GRAS-type transcription factor & original description: none	0.06	OrthoFinder output from all 47 species
Spa_g14334	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g15312	PAT1	GRAS-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g23112	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g14260	PAT1	GRAS-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g26035	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g28749	PAT1	GRAS-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e010646_P001	PAT1, Zm00001e010646	transcription factor (GRAS)	0.05	OrthoFinder output from all 47 species
Zm00001e035384_P001	PAT1, Zm00001e035384	transcription factor (GRAS)	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
CC	GO:0005829	cytosol	IDA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0002252	immune effector process	IEP	HCCA
BP	GO:0002679	respiratory burst involved in defense response	IEP	HCCA
MF	GO:0004657	proline dehydrogenase activity	IEP	HCCA
BP	GO:0006536	glutamate metabolic process	IEP	HCCA
BP	GO:0006537	glutamate biosynthetic process	IEP	HCCA
BP	GO:0006560	proline metabolic process	IEP	HCCA
BP	GO:0006562	proline catabolic process	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
BP	GO:0009063	amino acid catabolic process	IEP	HCCA
BP	GO:0009064	glutamine family amino acid metabolic process	IEP	HCCA
BP	GO:0009065	glutamine family amino acid catabolic process	IEP	HCCA
BP	GO:0009084	glutamine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009605	response to external stimulus	IEP	HCCA
BP	GO:0009607	response to biotic stimulus	IEP	HCCA
BP	GO:0009624	response to nematode	IEP	HCCA
MF	GO:0016645	oxidoreductase activity, acting on the CH-NH group of donors	IEP	HCCA
MF	GO:0016649	oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor	IEP	HCCA
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	HCCA
BP	GO:0042221	response to chemical	IEP	HCCA
BP	GO:0043069	negative regulation of programmed cell death	IEP	HCCA
BP	GO:0043207	response to external biotic stimulus	IEP	HCCA
BP	GO:0043648	dicarboxylic acid metabolic process	IEP	HCCA
BP	GO:0043650	dicarboxylic acid biosynthetic process	IEP	HCCA
BP	GO:0044419	biological process involved in interspecies interaction between organisms	IEP	HCCA
BP	GO:0045730	respiratory burst	IEP	HCCA
BP	GO:0051707	response to other organism	IEP	HCCA
BP	GO:0060548	negative regulation of cell death	IEP	HCCA
BP	GO:0098542	defense response to other organism	IEP	HCCA
BP	GO:1901606	alpha-amino acid catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005202	TF_GRAS	229	597

External Links

No external refs found!

AT1G50600 (SCL5)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation