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  5. AT1G50280

AT1G50280


Description : Phototropic-responsive NPH3 family protein


Gene families : OG0004897 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004897_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G50280
Cluster HCCA: Cluster_117

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01000400001 No alias BTB/POZ domain-containing protein At3g22104... 0.04 OrthoFinder output from all 47 species
Pnu_g12663 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc07g052970.3.1 Solyc07g052970 BTB/POZ domain-containing protein At3g22104... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004871 obsolete signal transducer activity ISS Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0009416 response to light stimulus ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004121 cystathionine beta-lyase activity IEP HCCA
MF GO:0004551 dinucleotide phosphatase activity IEP HCCA
MF GO:0004856 xylulokinase activity IEP HCCA
BP GO:0009092 homoserine metabolic process IEP HCCA
CC GO:0009507 chloroplast IEP HCCA
CC GO:0009526 plastid envelope IEP HCCA
CC GO:0009536 plastid IEP HCCA
CC GO:0009705 plant-type vacuole membrane IEP HCCA
BP GO:0009740 gibberellic acid mediated signaling pathway IEP HCCA
CC GO:0009941 chloroplast envelope IEP HCCA
MF GO:0009975 cyclase activity IEP HCCA
BP GO:0010039 response to iron ion IEP HCCA
BP GO:0010476 gibberellin mediated signaling pathway IEP HCCA
BP GO:0016119 carotene metabolic process IEP HCCA
BP GO:0016120 carotene biosynthetic process IEP HCCA
MF GO:0016846 carbon-sulfur lyase activity IEP HCCA
MF GO:0016860 intramolecular oxidoreductase activity IEP HCCA
MF GO:0019200 carbohydrate kinase activity IEP HCCA
BP GO:0019279 L-methionine biosynthetic process from L-homoserine via cystathionine IEP HCCA
CC GO:0031967 organelle envelope IEP HCCA
CC GO:0031975 envelope IEP HCCA
BP GO:0042214 terpene metabolic process IEP HCCA
BP GO:0042726 flavin-containing compound metabolic process IEP HCCA
MF GO:0045436 lycopene beta cyclase activity IEP HCCA
BP GO:0046246 terpene biosynthetic process IEP HCCA
MF GO:0047884 FAD diphosphatase activity IEP HCCA
BP GO:0071265 L-methionine biosynthetic process IEP HCCA
BP GO:0071266 'de novo' L-methionine biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR027356 NPH3_dom 200 442
No external refs found!