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AT1G49940


Description : BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G04770.1); Has 40 Blast hits to 40 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).


Gene families : OG0001526 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001526_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G49940
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
LOC_Os09g36740.1 LOC_Os09g36740 meiotic exit regulator (MS5/TDM1) 0.03 OrthoFinder output from all 47 species
Mp3g16860.1 No alias meiotic exit regulator (MS5/TDM1) 0.02 OrthoFinder output from all 47 species
Msp_g38700 No alias regulatory protein *(SDI) of sulfate homeostasis &... 0.02 OrthoFinder output from all 47 species
Tin_g00694 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
MF GO:0003725 double-stranded RNA binding IEP HCCA
MF GO:0005244 voltage-gated monoatomic ion channel activity IEP HCCA
MF GO:0005253 monoatomic anion channel activity IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005834 heterotrimeric G-protein complex IEP HCCA
BP GO:0006820 monoatomic anion transport IEP HCCA
MF GO:0008308 voltage-gated monoatomic anion channel activity IEP HCCA
MF GO:0008509 monoatomic anion transmembrane transporter activity IEP HCCA
MF GO:0022832 voltage-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
CC GO:0033597 mitotic checkpoint complex IEP HCCA
CC GO:0098797 plasma membrane protein complex IEP HCCA
CC GO:1905360 GTPase complex IEP HCCA

No InterPro domains available for this sequence

No external refs found!