AT1G49475

Description : AP2/B3-like transcriptional factor family protein

Gene families : OG0004345 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004345_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G49475

Target	Alias	Description	ECC score	Gene Family Method
AT3G18960	No alias	AP2/B3-like transcriptional factor family protein	0.05	OrthoFinder output from all 47 species
LOC_Os03g42420.1	LOC_Os03g42420	transcription factor (REM)	0.02	OrthoFinder output from all 47 species
LOC_Os03g42430.1	LOC_Os03g42430	transcription factor (REM)	0.03	OrthoFinder output from all 47 species
LOC_Os08g23570.1	LOC_Os08g23570	Putative B3 domain-containing protein Os08g0325100...	0.03	OrthoFinder output from all 47 species
LOC_Os12g40090.1	LOC_Os12g40090	transcription factor (REM)	0.04	OrthoFinder output from all 47 species
LOC_Os12g40120.1	LOC_Os12g40120	transcription factor (REM)	0.03	OrthoFinder output from all 47 species
Solyc01g013995.2.1	Solyc01g013995	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Solyc01g108930.3.1	Solyc01g108930	B3 domain-containing protein REM16 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc02g081780.3.1	Solyc02g081780	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
CC	GO:0000419	RNA polymerase V complex	IEP	HCCA
CC	GO:0000428	DNA-directed RNA polymerase complex	IEP	HCCA
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
CC	GO:0009505	plant-type cell wall	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0019725	cellular homeostasis	IEP	HCCA
CC	GO:0030880	RNA polymerase complex	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	HCCA
BP	GO:0042592	homeostatic process	IEP	HCCA
BP	GO:0045454	cell redox homeostasis	IEP	HCCA
CC	GO:0055029	nuclear DNA-directed RNA polymerase complex	IEP	HCCA
CC	GO:0061695	transferase complex, transferring phosphorus-containing groups	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
MF	GO:0097747	RNA polymerase activity	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
CC	GO:1990234	transferase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	45	123

External Links

No external refs found!

AT1G49475

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation