1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G48100

AT1G48100


Description : Pectin lyase-like superfamily protein


Gene families : OG0000452 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000452_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G48100
Cluster HCCA: Cluster_139

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00104p00026540 evm_27.TU.AmTr_v1... Enzyme classification.EC_3 hydrolases.EC_3.2 glycosylase 0.02 OrthoFinder output from all 47 species
AT3G26610 No alias Pectin lyase-like superfamily protein 0.04 OrthoFinder output from all 47 species
Aop_g12304 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Aspi01Gene13416.t1 Aspi01Gene13416 EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01032114001 QRT2 Polygalacturonase OS=Actinidia deliciosa 0.03 OrthoFinder output from all 47 species
LOC_Os05g20020.1 LOC_Os05g20020 Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
Mp3g21140.1 No alias Polygalacturonase At1g48100 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Pir_g17999 No alias EC_3.2 glycosylase & original description: none 0.02 OrthoFinder output from all 47 species
Pir_g35940 No alias EC_3.2 glycosylase & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g54713 No alias polygalacturonase *(PGX1-like) & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000024 maltose biosynthetic process IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
BP GO:0001101 response to acid chemical IEP HCCA
MF GO:0004310 farnesyl-diphosphate farnesyltransferase activity IEP HCCA
MF GO:0004311 farnesyltranstransferase activity IEP HCCA
MF GO:0004659 prenyltransferase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004866 endopeptidase inhibitor activity IEP HCCA
MF GO:0004867 serine-type endopeptidase inhibitor activity IEP HCCA
MF GO:0004869 cysteine-type endopeptidase inhibitor activity IEP HCCA
BP GO:0005983 starch catabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006970 response to osmotic stress IEP HCCA
BP GO:0006972 hyperosmotic response IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0008378 galactosyltransferase activity IEP HCCA
BP GO:0009251 glucan catabolic process IEP HCCA
BP GO:0009266 response to temperature stimulus IEP HCCA
BP GO:0009269 response to desiccation IEP HCCA
BP GO:0009312 oligosaccharide biosynthetic process IEP HCCA
BP GO:0009409 response to cold IEP HCCA
BP GO:0009414 response to water deprivation IEP HCCA
BP GO:0009415 response to water IEP HCCA
CC GO:0009532 plastid stroma IEP HCCA
CC GO:0009570 chloroplast stroma IEP HCCA
BP GO:0009628 response to abiotic stimulus IEP HCCA
BP GO:0009631 cold acclimation IEP HCCA
BP GO:0009651 response to salt stress IEP HCCA
BP GO:0009737 response to abscisic acid IEP HCCA
BP GO:0010017 red or far-red light signaling pathway IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010039 response to iron ion IEP HCCA
BP GO:0010150 leaf senescence IEP HCCA
BP GO:0010466 negative regulation of peptidase activity IEP HCCA
BP GO:0010951 negative regulation of endopeptidase activity IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
BP GO:0030162 regulation of proteolysis IEP HCCA
MF GO:0030234 enzyme regulator activity IEP HCCA
MF GO:0030414 peptidase inhibitor activity IEP HCCA
BP GO:0031647 regulation of protein stability IEP HCCA
BP GO:0033993 response to lipid IEP HCCA
MF GO:0035250 UDP-galactosyltransferase activity IEP HCCA
BP GO:0042538 hyperosmotic salinity response IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0044247 cellular polysaccharide catabolic process IEP HCCA
BP GO:0044275 cellular carbohydrate catabolic process IEP HCCA
BP GO:0045861 negative regulation of proteolysis IEP HCCA
BP GO:0046351 disaccharide biosynthetic process IEP HCCA
CC GO:0046658 obsolete anchored component of plasma membrane IEP HCCA
MF GO:0046910 pectinesterase inhibitor activity IEP HCCA
MF GO:0047216 inositol 3-alpha-galactosyltransferase activity IEP HCCA
CC GO:0048046 apoplast IEP HCCA
BP GO:0050821 protein stabilization IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051346 negative regulation of hydrolase activity IEP HCCA
BP GO:0052547 regulation of peptidase activity IEP HCCA
BP GO:0052548 regulation of endopeptidase activity IEP HCCA
BP GO:0055072 iron ion homeostasis IEP HCCA
BP GO:0055076 transition metal ion homeostasis IEP HCCA
MF GO:0061134 peptidase regulator activity IEP HCCA
MF GO:0061135 endopeptidase regulator activity IEP HCCA
BP GO:0071489 cellular response to red or far red light IEP HCCA
BP GO:0090693 plant organ senescence IEP HCCA
BP GO:0097305 response to alcohol IEP HCCA
MF GO:0098772 molecular function regulator activity IEP HCCA
MF GO:0140678 molecular function inhibitor activity IEP HCCA
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 114 427
No external refs found!