AT1G35560

Description : TCP family transcription factor

Gene families : OG0000443 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000443_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G35560

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00081210	AT-TCP20, TCP20,...	RNA biosynthesis.transcriptional activation.TCP...	0.03	OrthoFinder output from all 47 species
AT1G72010	No alias	TCP family transcription factor	0.04	OrthoFinder output from all 47 species
AT2G45680	No alias	TCP family transcription factor	0.04	OrthoFinder output from all 47 species
Adi_g060147	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g069116	AtTCP14, TCP14	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g22689	No alias	TCP-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g07321	No alias	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g09029	No alias	TCP-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene72040.t1	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g15454	No alias	TCP-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Ehy_g07691	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g07713	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g26686	AT-TCP20, TCP20,...	TCP-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
MA_81710g0010	No alias	transcription factor (TCP)	0.03	OrthoFinder output from all 47 species
MA_96244g0010	No alias	no hits & (original description: none)	0.04	OrthoFinder output from all 47 species
Pir_g50317	AtTCP14, TCP14	TCP-type transcription factor & original description: none	0.04	OrthoFinder output from all 47 species
Solyc03g006800.1.1	Solyc03g006800	transcription factor (TCP)	0.02	OrthoFinder output from all 47 species
Zm00001e023066_P001	Zm00001e023066	transcription factor (TCP). CHE circadian clock repression factor	0.04	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0040034	regulation of development, heterochronic	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0048506	regulation of timing of meristematic phase transition	None	Extended
BP	GO:0048509	regulation of meristem development	None	Extended
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IMP	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	HCCA
BP	GO:0000105	histidine biosynthetic process	IEP	HCCA
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
BP	GO:0001887	selenium compound metabolic process	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003879	ATP phosphoribosyltransferase activity	IEP	HCCA
MF	GO:0003962	cystathionine gamma-synthase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006534	cysteine metabolic process	IEP	HCCA
BP	GO:0006547	histidine metabolic process	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006566	threonine metabolic process	IEP	HCCA
BP	GO:0006567	threonine catabolic process	IEP	HCCA
BP	GO:0006730	one-carbon metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006809	nitric oxide biosynthetic process	IEP	HCCA
BP	GO:0006833	water transport	IEP	HCCA
BP	GO:0008652	amino acid biosynthetic process	IEP	HCCA
MF	GO:0008940	nitrate reductase activity	IEP	HCCA
BP	GO:0009056	catabolic process	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009068	aspartate family amino acid catabolic process	IEP	HCCA
BP	GO:0009069	serine family amino acid metabolic process	IEP	HCCA
BP	GO:0009070	serine family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0009410	response to xenobiotic stimulus	IEP	HCCA
CC	GO:0009532	plastid stroma	IEP	HCCA
CC	GO:0009570	chloroplast stroma	IEP	HCCA
BP	GO:0009608	response to symbiont	IEP	HCCA
BP	GO:0009610	response to symbiotic fungus	IEP	HCCA
BP	GO:0009620	response to fungus	IEP	HCCA
BP	GO:0009683	indoleacetic acid metabolic process	IEP	HCCA
BP	GO:0009684	indoleacetic acid biosynthetic process	IEP	HCCA
MF	GO:0009703	nitrate reductase (NADH) activity	IEP	HCCA
BP	GO:0009850	auxin metabolic process	IEP	HCCA
BP	GO:0009851	auxin biosynthetic process	IEP	HCCA
BP	GO:0009873	ethylene-activated signaling pathway	IEP	HCCA
BP	GO:0009987	cellular process	IEP	HCCA
BP	GO:0010224	response to UV-B	IEP	HCCA
CC	GO:0010319	stromule	IEP	HCCA
BP	GO:0010411	xyloglucan metabolic process	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0016002	sulfite reductase activity	IEP	HCCA
BP	GO:0016049	cell growth	IEP	HCCA
BP	GO:0016053	organic acid biosynthetic process	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016661	oxidoreductase activity, acting on other nitrogenous compounds as donors	IEP	HCCA
MF	GO:0016667	oxidoreductase activity, acting on a sulfur group of donors	IEP	HCCA
MF	GO:0016673	oxidoreductase activity, acting on a sulfur group of donors, iron-sulfur protein as acceptor	IEP	HCCA
MF	GO:0016757	glycosyltransferase activity	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
BP	GO:0019344	cysteine biosynthetic process	IEP	HCCA
BP	GO:0019419	sulfate reduction	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0030551	cyclic nucleotide binding	IEP	HCCA
BP	GO:0040007	growth	IEP	HCCA
BP	GO:0042044	fluid transport	IEP	HCCA
BP	GO:0042126	nitrate metabolic process	IEP	HCCA
BP	GO:0042128	nitrate assimilation	IEP	HCCA
BP	GO:0042430	indole-containing compound metabolic process	IEP	HCCA
BP	GO:0042435	indole-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0044237	cellular metabolic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044272	sulfur compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0044283	small molecule biosynthetic process	IEP	HCCA
BP	GO:0046209	nitric oxide metabolic process	IEP	HCCA
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	HCCA
MF	GO:0046857	oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor	IEP	HCCA
BP	GO:0048588	developmental cell growth	IEP	HCCA
BP	GO:0048589	developmental growth	IEP	HCCA
BP	GO:0048767	root hair elongation	IEP	HCCA
MF	GO:0050311	sulfite reductase (ferredoxin) activity	IEP	HCCA
MF	GO:0050463	nitrate reductase [NAD(P)H] activity	IEP	HCCA
BP	GO:0050896	response to stimulus	IEP	HCCA
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	HCCA
BP	GO:0071941	nitrogen cycle metabolic process	IEP	HCCA
BP	GO:0080167	response to karrikin	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901575	organic substance catabolic process	IEP	HCCA
BP	GO:1901605	alpha-amino acid metabolic process	IEP	HCCA
BP	GO:1901607	alpha-amino acid biosynthetic process	IEP	HCCA
BP	GO:2001057	reactive nitrogen species metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR017887	TF_TCP_subgr	55	167

External Links

No external refs found!

AT1G35560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation