AT1G35460

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000019 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G35460

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00013p00245920	evm_27.TU.AmTr_v1...	External stimuli response.light.UV-A/blue...	0.02	OrthoFinder output from all 47 species
Als_g21524	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Als_g34054	UNE12	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g10628	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g56154	BPEp, ZCW32, BPE, BPEub	regulatory protein (CIB) of blue light perception &...	0.02	OrthoFinder output from all 47 species
Aspi01Gene54623.t1	LRL3, Aspi01Gene54623	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0015.g013709	LRL1	bHLH-type transcription factor & original description: CDS=1-1035	0.01	OrthoFinder output from all 47 species
Cba_g04118	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g18078	HEC2	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01033350001	No alias	External stimuli response.light.UV-A/blue...	0.03	OrthoFinder output from all 47 species
LOC_Os06g30090.1	RHD6, LOC_Os06g30090	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species
Lfl_g06729	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Lfl_g26119	LRL3	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_42080g0010	CIB1	transcription factor (bHLH). transcriptional regulator (CIB)	0.03	OrthoFinder output from all 47 species
Msp_g08624	LRL3	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g08799	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19414	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g19998	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g43162	No alias	regulatory protein (CIB) of blue light perception &...	0.03	OrthoFinder output from all 47 species
Ore_g43163	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g18900	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g15799	No alias	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc06g065040.4.1	Solyc06g065040	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Tin_g13566	SPT	bHLH-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g38256	RSL2	bHLH-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e018857_P002	Zm00001e018857	transcription factor (bHLH). transcriptional regulator (CIB)	0.02	OrthoFinder output from all 47 species
Zm00001e036261_P001	LRL3, Zm00001e036261	transcription factor (bHLH)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000082	G1/S transition of mitotic cell cycle	IEP	HCCA
MF	GO:0003993	acid phosphatase activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
MF	GO:0004722	protein serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0006260	DNA replication	IEP	HCCA
BP	GO:0006261	DNA-templated DNA replication	IEP	HCCA
BP	GO:0009637	response to blue light	IEP	HCCA
BP	GO:0009785	blue light signaling pathway	IEP	HCCA
BP	GO:0010090	trichome morphogenesis	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
BP	GO:0030522	intracellular receptor signaling pathway	IEP	HCCA
BP	GO:0042023	DNA endoreduplication	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0044770	cell cycle phase transition	IEP	HCCA
BP	GO:0044772	mitotic cell cycle phase transition	IEP	HCCA
BP	GO:0044786	cell cycle DNA replication	IEP	HCCA
BP	GO:0044843	cell cycle G1/S phase transition	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
BP	GO:0048481	plant ovule development	IEP	HCCA
BP	GO:0051302	regulation of cell division	IEP	HCCA
BP	GO:0071214	cellular response to abiotic stimulus	IEP	HCCA
BP	GO:0071478	cellular response to radiation	IEP	HCCA
BP	GO:0071482	cellular response to light stimulus	IEP	HCCA
BP	GO:0071483	cellular response to blue light	IEP	HCCA
BP	GO:0104004	cellular response to environmental stimulus	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1903047	mitotic cell cycle process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	193	238

External Links

No external refs found!

AT1G35460

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation