AT1G34650 (HDG10)

Aliases : HDG10

Description : homeodomain GLABROUS 10

Gene families : OG0000253 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000253_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G34650

Target	Alias	Description	ECC score	Gene Family Method
AT2G32370	HDG3	homeodomain GLABROUS 3	0.04	OrthoFinder output from all 47 species
AT4G04890	PDF2	protodermal factor 2	0.04	OrthoFinder output from all 47 species
Aev_g06757	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.29G064400.1	ATML1, Ceric.29G064400	HD-ZIP IV-type transcription factor & original...	0.02	OrthoFinder output from all 47 species
Dcu_g35649	HDG1, HD-GL2-1	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g05023	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01001986001	HDG2	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
GSVIVT01012643001	PDF2	RNA biosynthesis.transcriptional activation.HB...	0.03	OrthoFinder output from all 47 species
LOC_Os01g57890.1	PDF2, LOC_Os01g57890	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
LOC_Os06g10600.1	EDT1, HDG11,...	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
LOC_Os08g04190.1	PDF2, LOC_Os08g04190	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
LOC_Os09g35760.1	HDG1, HD-GL2-1,...	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Len_g52682	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
MA_10318273g0010	HDG2	transcription factor (HD-ZIP IV)	0.04	OrthoFinder output from all 47 species
MA_10374232g0010	PDF2	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
MA_122121g0010	PDF2	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
MA_17048g0010	HDG5, HB-7	transcription factor (HD-ZIP IV)	0.05	OrthoFinder output from all 47 species
MA_38472g0010	HDG1, HD-GL2-1	transcription factor (HD-ZIP IV)	0.02	OrthoFinder output from all 47 species
Nbi_g13220	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g17562	PDF2	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Sacu_v1.1_s0235.g026541	ATML1	HD-ZIP IV-type transcription factor & original...	0.03	OrthoFinder output from all 47 species
Sam_g12326	No alias	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g080260.4.1	PDF2, Solyc02g080260	transcription factor (HD-ZIP IV)	0.03	OrthoFinder output from all 47 species
Solyc08g062530.4.1	HDG10, Solyc08g062530	Homeobox-leucine zipper protein ROC8 OS=Oryza sativa...	0.01	OrthoFinder output from all 47 species
Tin_g19294	ATML1	HD-ZIP IV-type transcription factor & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e041435_P003	HDG1, HD-GL2-1,...	transcription factor (HD-ZIP IV)	0.01	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0004650	polygalacturonase activity	IEP	HCCA
MF	GO:0004805	trehalose-phosphatase activity	IEP	HCCA
BP	GO:0005991	trehalose metabolic process	IEP	HCCA
BP	GO:0005992	trehalose biosynthetic process	IEP	HCCA
BP	GO:0006349	regulation of gene expression by genomic imprinting	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
BP	GO:0006721	terpenoid metabolic process	IEP	HCCA
BP	GO:0008299	isoprenoid biosynthetic process	IEP	HCCA
MF	GO:0008483	transaminase activity	IEP	HCCA
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0009646	response to absence of light	IEP	HCCA
BP	GO:0009685	gibberellin metabolic process	IEP	HCCA
BP	GO:0009686	gibberellin biosynthetic process	IEP	HCCA
BP	GO:0009888	tissue development	IEP	HCCA
BP	GO:0009960	endosperm development	IEP	HCCA
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	HCCA
BP	GO:0010252	auxin homeostasis	IEP	HCCA
MF	GO:0010279	indole-3-acetic acid amido synthetase activity	IEP	HCCA
BP	GO:0010588	cotyledon vascular tissue pattern formation	IEP	HCCA
BP	GO:0016101	diterpenoid metabolic process	IEP	HCCA
BP	GO:0016102	diterpenoid biosynthetic process	IEP	HCCA
BP	GO:0016114	terpenoid biosynthetic process	IEP	HCCA
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	HCCA
MF	GO:0016706	2-oxoglutarate-dependent dioxygenase activity	IEP	HCCA
MF	GO:0016707	gibberellin 3-beta-dioxygenase activity	IEP	HCCA
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016846	carbon-sulfur lyase activity	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
MF	GO:0019203	carbohydrate phosphatase activity	IEP	HCCA
CC	GO:0043076	megasporocyte nucleus	IEP	HCCA
CC	GO:0043078	polar nucleus	IEP	HCCA
MF	GO:0045544	gibberellin 20-oxidase activity	IEP	HCCA
BP	GO:0046351	disaccharide biosynthetic process	IEP	HCCA
BP	GO:0046688	response to copper ion	IEP	HCCA
BP	GO:0048317	seed morphogenesis	IEP	HCCA
MF	GO:0050362	L-tryptophan:2-oxoglutarate aminotransferase activity	IEP	HCCA
MF	GO:0051213	dioxygenase activity	IEP	HCCA
BP	GO:0051645	Golgi localization	IEP	HCCA
BP	GO:0051646	mitochondrion localization	IEP	HCCA
BP	GO:0060151	peroxisome localization	IEP	HCCA
MF	GO:0070529	L-tryptophan aminotransferase activity	IEP	HCCA
BP	GO:0080022	primary root development	IEP	HCCA
MF	GO:0080097	L-tryptophan:pyruvate aminotransferase activity	IEP	HCCA
BP	GO:0080113	regulation of seed growth	IEP	HCCA
BP	GO:2000014	regulation of endosperm development	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002913	START_lipid-bd_dom	228	453
IPR001356	Homeobox_dom	19	72

External Links

No external refs found!

AT1G34650 (HDG10)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation