AT1G33470

Description : RNA-binding (RRM/RBD/RNP motifs) family protein

Gene families : OG0000717 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G33470
Cluster	HCCA: Cluster_82

Target	Alias	Description	ECC score	Gene Family Method
AT1G22330	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.05	OrthoFinder output from all 47 species
Aev_g25590	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g18787	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Ala_g19204	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene63711.t1	Aspi01Gene63711	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g11789	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g14408	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g04437	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g20779	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01027434001	No alias	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_07133	No alias	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
LOC_Os01g65550.1	LOC_Os01g65550	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.08	OrthoFinder output from all 47 species
LOC_Os06g11730.1	LOC_Os06g11730	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Len_g15889	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
MA_1682g0010	No alias	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Mp8g04430.1	No alias	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Pir_g03322	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g21802	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g14109	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0006.g003275	No alias	not classified & original description: CDS=1-1056	0.04	OrthoFinder output from all 47 species
Solyc11g044470.3.1	Solyc11g044470	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.12	OrthoFinder output from all 47 species
Zm00001e018568_P001	Zm00001e018568	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Zm00001e019085_P001	Zm00001e019085	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.06	OrthoFinder output from all 47 species
Zm00001e028635_P002	Zm00001e028635	Probable RNA-binding protein ARP1 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	ND	Interproscan
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
BP	GO:0000272	polysaccharide catabolic process	IEP	HCCA
MF	GO:0003774	cytoskeletal motor activity	IEP	HCCA
MF	GO:0003777	microtubule motor activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0004674	protein serine/threonine kinase activity	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005874	microtubule	IEP	HCCA
CC	GO:0005886	plasma membrane	IEP	HCCA
BP	GO:0006084	acetyl-CoA metabolic process	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006555	methionine metabolic process	IEP	HCCA
BP	GO:0006637	acyl-CoA metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
BP	GO:0006857	oligopeptide transport	IEP	HCCA
BP	GO:0007010	cytoskeleton organization	IEP	HCCA
BP	GO:0007020	microtubule nucleation	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
BP	GO:0007166	cell surface receptor signaling pathway	IEP	HCCA
BP	GO:0007167	enzyme-linked receptor protein signaling pathway	IEP	HCCA
BP	GO:0007169	transmembrane receptor protein tyrosine kinase signaling pathway	IEP	HCCA
BP	GO:0007623	circadian rhythm	IEP	HCCA
MF	GO:0008017	microtubule binding	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0008361	regulation of cell size	IEP	HCCA
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	HCCA
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	HCCA
BP	GO:0009086	methionine biosynthetic process	IEP	HCCA
BP	GO:0009832	plant-type cell wall biogenesis	IEP	HCCA
BP	GO:0009914	hormone transport	IEP	HCCA
BP	GO:0009926	auxin polar transport	IEP	HCCA
BP	GO:0010015	root morphogenesis	IEP	HCCA
BP	GO:0010075	regulation of meristem growth	IEP	HCCA
BP	GO:0010215	cellulose microfibril organization	IEP	HCCA
BP	GO:0010229	inflorescence development	IEP	HCCA
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	HCCA
MF	GO:0015112	nitrate transmembrane transporter activity	IEP	HCCA
MF	GO:0015631	tubulin binding	IEP	HCCA
BP	GO:0015833	peptide transport	IEP	HCCA
BP	GO:0016043	cellular component organization	IEP	HCCA
BP	GO:0016128	phytosteroid metabolic process	IEP	HCCA
BP	GO:0016129	phytosteroid biosynthetic process	IEP	HCCA
BP	GO:0016131	brassinosteroid metabolic process	IEP	HCCA
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
BP	GO:0030198	extracellular matrix organization	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
BP	GO:0032535	regulation of cellular component size	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	HCCA
BP	GO:0035303	regulation of dephosphorylation	IEP	HCCA
BP	GO:0035304	regulation of protein dephosphorylation	IEP	HCCA
BP	GO:0035383	thioester metabolic process	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
BP	GO:0040008	regulation of growth	IEP	HCCA
BP	GO:0042023	DNA endoreduplication	IEP	HCCA
BP	GO:0042886	amide transport	IEP	HCCA
BP	GO:0043062	extracellular structure organization	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0044786	cell cycle DNA replication	IEP	HCCA
BP	GO:0045229	external encapsulating structure organization	IEP	HCCA
BP	GO:0048511	rhythmic process	IEP	HCCA
BP	GO:0048638	regulation of developmental growth	IEP	HCCA
BP	GO:0050793	regulation of developmental process	IEP	HCCA
BP	GO:0060918	auxin transport	IEP	HCCA
MF	GO:0080054	low-affinity nitrate transmembrane transporter activity	IEP	HCCA
BP	GO:0090066	regulation of anatomical structure size	IEP	HCCA
BP	GO:0090567	reproductive shoot system development	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
CC	GO:0099080	supramolecular complex	IEP	HCCA
CC	GO:0099081	supramolecular polymer	IEP	HCCA
CC	GO:0099512	supramolecular fiber	IEP	HCCA
CC	GO:0099513	polymeric cytoskeletal fiber	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
BP	GO:1905392	plant organ morphogenesis	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	9	64

External Links

No external refs found!

AT1G33470

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation