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  5. AT1G30920

AT1G30920


Description : F-box family protein


Gene families : OG0001988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001988_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G30920

Target Alias Description ECC score Gene Family Method Actions
AT1G23037 No alias F-box associated ubiquitination effector family protein 0.02 OrthoFinder output from all 47 species
AT1G26515 No alias F-box and associated interaction domains-containing protein 0.06 OrthoFinder output from all 47 species
AT1G30780 No alias F-box associated ubiquitination effector family protein 0.03 OrthoFinder output from all 47 species
AT1G30790 No alias F-box and associated interaction domains-containing protein 0.08 OrthoFinder output from all 47 species
AT1G30925 No alias phospholipase Cs 0.05 OrthoFinder output from all 47 species
AT1G31080 No alias F-box family protein 0.03 OrthoFinder output from all 47 species
AT1G31163 No alias F-box associated ubiquitination effector family protein 0.04 OrthoFinder output from all 47 species
AT1G32660 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from all 47 species
AT1G33010 No alias F-box and associated interaction domains-containing protein 0.05 OrthoFinder output from all 47 species
AT1G46840 No alias F-box family protein 0.07 OrthoFinder output from all 47 species
AT1G50880 No alias F-box and associated interaction domains-containing protein 0.05 OrthoFinder output from all 47 species
AT1G52490 No alias CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like... 0.06 OrthoFinder output from all 47 species
AT1G53370 No alias F-box and associated interaction domains-containing protein 0.05 OrthoFinder output from all 47 species
AT1G53815 No alias F-box family protein 0.03 OrthoFinder output from all 47 species
AT1G55070 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from all 47 species
AT1G59690 No alias F-box associated ubiquitination effector family protein 0.08 OrthoFinder output from all 47 species
AT1G67130 No alias F-box family protein 0.08 OrthoFinder output from all 47 species
AT2G02890 No alias F-box family protein 0.03 OrthoFinder output from all 47 species
AT2G16450 No alias F-box and associated interaction domains-containing protein 0.07 OrthoFinder output from all 47 species
AT2G16810 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from all 47 species
AT2G23160 No alias F-box family protein 0.08 OrthoFinder output from all 47 species
AT2G31470 DOR F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT2G32470 No alias F-box associated ubiquitination effector family protein 0.04 OrthoFinder output from all 47 species
AT3G04660 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT3G10790 No alias F-box associated ubiquitination effector family protein 0.05 OrthoFinder output from all 47 species
AT3G49440 No alias F-box associated ubiquitination effector family protein 0.02 OrthoFinder output from all 47 species
AT3G52320 No alias F-box and associated interaction domains-containing protein 0.08 OrthoFinder output from all 47 species
AT3G52330 No alias F-box associated ubiquitination effector family protein 0.03 OrthoFinder output from all 47 species
AT3G61340 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT4G19930 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT4G38870 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT5G42430 No alias F-box and associated interaction domains-containing protein 0.06 OrthoFinder output from all 47 species
AT5G44345 No alias F-box associated ubiquitination effector family protein 0.04 OrthoFinder output from all 47 species
AT5G50220 No alias F-box family protein 0.02 OrthoFinder output from all 47 species
AT5G52610 No alias F-box and associated interaction domains-containing protein 0.08 OrthoFinder output from all 47 species
AT5G52620 No alias F-box associated ubiquitination effector family protein 0.05 OrthoFinder output from all 47 species
AT5G62060 No alias F-box and associated interaction domains-containing protein 0.02 OrthoFinder output from all 47 species
AT5G62660 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from all 47 species
AT5G65850 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
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Type GO Term Name Evidence Source
MF GO:0000156 phosphorelay response regulator activity IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0004842 ubiquitin-protein transferase activity IEP HCCA
CC GO:0005634 nucleus IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0009736 cytokinin-activated signaling pathway IEP HCCA
MF GO:0019787 ubiquitin-like protein transferase activity IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
InterPro domains Description Start Stop
IPR013187 F-box-assoc_dom_typ3 214 341
IPR001810 F-box_dom 9 47
No external refs found!