AT1G30780


Description : F-box associated ubiquitination effector family protein


Gene families : OG0001988 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001988_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G30780
Cluster HCCA: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
AT1G19160 No alias F-box family protein 0.02 OrthoFinder output from all 47 species
AT1G23037 No alias F-box associated ubiquitination effector family protein 0.03 OrthoFinder output from all 47 species
AT1G30790 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT1G30920 No alias F-box family protein 0.03 OrthoFinder output from all 47 species
AT1G30930 No alias F-box family protein 0.04 OrthoFinder output from all 47 species
AT1G32420 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT1G47765 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from all 47 species
AT1G48060 No alias F-box and associated interaction domains-containing protein 0.02 OrthoFinder output from all 47 species
AT1G53815 No alias F-box family protein 0.03 OrthoFinder output from all 47 species
AT1G59690 No alias F-box associated ubiquitination effector family protein 0.08 OrthoFinder output from all 47 species
AT1G61060 No alias F-box family protein 0.04 OrthoFinder output from all 47 species
AT1G67130 No alias F-box family protein 0.03 OrthoFinder output from all 47 species
AT2G02890 No alias F-box family protein 0.03 OrthoFinder output from all 47 species
AT2G16220 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT2G16810 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from all 47 species
AT2G23160 No alias F-box family protein 0.04 OrthoFinder output from all 47 species
AT3G10990 No alias F-box associated ubiquitination effector family protein 0.03 OrthoFinder output from all 47 species
AT3G52320 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from all 47 species
AT4G13060 No alias F-box associated ubiquitination effector family protein 0.03 OrthoFinder output from all 47 species
AT4G19930 No alias F-box and associated interaction domains-containing protein 0.04 OrthoFinder output from all 47 species
AT4G29970 No alias F-box and associated interaction domains-containing protein 0.03 OrthoFinder output from all 47 species
AT5G22791 No alias F-box family protein 0.04 OrthoFinder output from all 47 species
AT5G50220 No alias F-box family protein 0.02 OrthoFinder output from all 47 species
AT5G52610 No alias F-box and associated interaction domains-containing protein 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003674 molecular_function ND Interproscan
BP GO:0008150 biological_process ND Interproscan
Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP HCCA
BP GO:0006863 purine nucleobase transport IEP HCCA
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP HCCA
BP GO:0010528 regulation of transposition IEP HCCA
BP GO:0010529 negative regulation of transposition IEP HCCA
BP GO:0015851 nucleobase transport IEP HCCA
BP GO:0031056 regulation of histone modification IEP HCCA
BP GO:0031057 negative regulation of histone modification IEP HCCA
BP GO:0031058 positive regulation of histone modification IEP HCCA
BP GO:0031060 regulation of histone methylation IEP HCCA
BP GO:0031062 positive regulation of histone methylation IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
BP GO:0031401 positive regulation of protein modification process IEP HCCA
MF GO:0031490 chromatin DNA binding IEP HCCA
BP GO:0035065 regulation of histone acetylation IEP HCCA
BP GO:0035067 negative regulation of histone acetylation IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051247 positive regulation of protein metabolic process IEP HCCA
BP GO:0051248 negative regulation of protein metabolic process IEP HCCA
BP GO:0051570 regulation of histone H3-K9 methylation IEP HCCA
BP GO:0051574 positive regulation of histone H3-K9 methylation IEP HCCA
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP HCCA
BP GO:1900111 positive regulation of histone H3-K9 dimethylation IEP HCCA
BP GO:1901983 regulation of protein acetylation IEP HCCA
BP GO:1901984 negative regulation of protein acetylation IEP HCCA
BP GO:2000756 regulation of peptidyl-lysine acetylation IEP HCCA
BP GO:2000757 negative regulation of peptidyl-lysine acetylation IEP HCCA
InterPro domains Description Start Stop
IPR001810 F-box_dom 233 273
IPR013187 F-box-assoc_dom_typ3 394 437
IPR013187 F-box-assoc_dom_typ3 349 388
No external refs found!