AT1G28310

Description : Dof-type zinc finger DNA-binding family protein

Gene families : OG0000067 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000067_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G28310

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00119p00099150	CDF2,...	RNA biosynthesis.transcriptional activation.C2C2...	0.04	OrthoFinder output from all 47 species
Adi_g050522	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g084666	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Adi_g113482	CDF3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g13677	CDF2	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g15159	CDF1	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g01888	CDF3	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Aob_g04142	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g18235	CDF2	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g09611	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g14669	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g36307	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene66325.t1	OBP3, Aspi01Gene66325	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g06470	CDF2	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g72531	CDF2	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.20G020200.1	CDF1, Ceric.20G020200	transcription factor *(DOF) & original description:...	0.04	OrthoFinder output from all 47 species
Ceric.39G043000.1	TMO6, Ceric.39G043000	transcription factor *(DOF) & original description:...	0.03	OrthoFinder output from all 47 species
Dac_g40320	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ehy_g28154	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
LOC_Os01g17000.1	CDF2, LOC_Os01g17000	transcription factor (DOF)	0.08	OrthoFinder output from all 47 species
LOC_Os03g16850.1	OBP3, LOC_Os03g16850	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
LOC_Os03g60630.1	LOC_Os03g60630	transcription factor (DOF)	0.07	OrthoFinder output from all 47 species
LOC_Os07g13260.1	OBP3, LOC_Os07g13260	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
LOC_Os12g38200.1	LOC_Os12g38200	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Len_g13353	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g15959	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Len_g56635	TMO6	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Lfl_g06630	OBP3	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Nbi_g15030	No alias	transcription factor *(DOF) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g00946	TMO6	transcription factor *(DOF) & original description: none	0.06	OrthoFinder output from all 47 species
Pir_g14294	CDF3	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g09266	No alias	transcription factor *(DOF) & original description: none	0.01	OrthoFinder output from all 47 species
Ppi_g61204	OBP4	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Ppi_g61765	DAG1	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g18370	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc02g076850.2.1	Solyc02g076850	transcription factor (DOF)	0.05	OrthoFinder output from all 47 species
Spa_g18028	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g23792	No alias	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g32905	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g41104	CDF3	transcription factor *(DOF) & original description: none	0.04	OrthoFinder output from all 47 species
Spa_g49511	TMO6	transcription factor *(DOF) & original description: none	0.02	OrthoFinder output from all 47 species
Tin_g32666	CDF1	transcription factor *(DOF) & original description: none	0.05	OrthoFinder output from all 47 species
Zm00001e003414_P001	OBP1, Zm00001e003414	transcription factor (DOF)	0.06	OrthoFinder output from all 47 species
Zm00001e006190_P001	Zm00001e006190	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e007228_P002	Zm00001e007228	transcription factor (DOF)	0.04	OrthoFinder output from all 47 species
Zm00001e010454_P001	TMO6, Zm00001e010454	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species
Zm00001e011750_P002	Zm00001e011750	transcription factor (DOF)	0.02	OrthoFinder output from all 47 species
Zm00001e029641_P001	OBP3, Zm00001e029641	transcription factor (DOF)	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0005515	protein binding	IEP	HCCA
BP	GO:0006109	regulation of carbohydrate metabolic process	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
MF	GO:0008092	cytoskeletal protein binding	IEP	HCCA
BP	GO:0010675	regulation of cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0032881	regulation of polysaccharide metabolic process	IEP	HCCA
MF	GO:0043621	protein self-association	IEP	HCCA
MF	GO:0046982	protein heterodimerization activity	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
BP	GO:2000904	regulation of starch metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003851	Znf_Dof	26	81

External Links

No external refs found!

AT1G28310

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation