1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G27595

AT1G27595


Description : CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink).


Gene families : OG0002204 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002204_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G27595

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00088050 ESP4,... RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.09 OrthoFinder output from all 47 species
Adi_g081403 No alias component *(Symplekin/Pta1) of Cleavage and... 0.07 OrthoFinder output from all 47 species
Aev_g04192 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Ala_g04252 No alias component *(Symplekin/Pta1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Ala_g06408 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Als_g09476 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Als_g23718 No alias component *(Symplekin/Pta1) of Cleavage and... 0.11 OrthoFinder output from all 47 species
Als_g63126 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.06 OrthoFinder output from all 47 species
Aop_g08267 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Aop_g22132 No alias component *(Symplekin/Pta1) of Cleavage and... 0.08 OrthoFinder output from all 47 species
Aspi01Gene50297.t1 Aspi01Gene50297 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Aspi01Gene50301.t1 ESP4, Aspi01Gene50301 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Aspi01Gene71059.t3 Aspi01Gene71059 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Azfi_s0006.g010125 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Cba_g05336 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Ceric.01G050700.1 Ceric.01G050700 component *(Symplekin/Pta1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Ceric.12G019100.1 ESP4, Ceric.12G019100 component *(Symplekin/Pta1) of Cleavage and... 0.08 OrthoFinder output from all 47 species
Dcu_g02040 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Dde_g04949 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
GSVIVT01009243001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.03 OrthoFinder output from all 47 species
GSVIVT01009244001 No alias RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.09 OrthoFinder output from all 47 species
GSVIVT01011157001 ESP4 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.06 OrthoFinder output from all 47 species
Gb_23976 ESP4 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
Gb_24672 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.1 OrthoFinder output from all 47 species
LOC_Os01g49940.1 LOC_Os01g49940 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.07 OrthoFinder output from all 47 species
LOC_Os07g49320.1 ESP4, LOC_Os07g49320 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.08 OrthoFinder output from all 47 species
Lfl_g06265 No alias component *(Symplekin/Pta1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
MA_10426054g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
MA_10426054g0020 ESP4 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.05 OrthoFinder output from all 47 species
MA_10432378g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
MA_433916g0010 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.04 OrthoFinder output from all 47 species
Mp6g03410.1 No alias component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.06 OrthoFinder output from all 47 species
Msp_g14027 No alias component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Msp_g24896 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.07 OrthoFinder output from all 47 species
Ore_g27266 No alias component *(Symplekin/Pta1) of Cleavage and... 0.05 OrthoFinder output from all 47 species
Pir_g22857 No alias component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Pir_g22861 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Pnu_g13823 No alias component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ppi_g13351 No alias component *(Symplekin/Pta1) of Cleavage and... 0.02 OrthoFinder output from all 47 species
Ppi_g15043 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Sacu_v1.1_s0168.g024262 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Sam_g08972 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Sam_g17991 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Smo442688 ESP4 RNA processing.RNA 3-end polyadenylation.Cleavage and... 0.02 OrthoFinder output from all 47 species
Solyc04g076900.2.1 Solyc04g076900 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.09 OrthoFinder output from all 47 species
Solyc04g076910.3.1 Solyc04g076910 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.08 OrthoFinder output from all 47 species
Solyc09g005330.3.1 ESP4, Solyc09g005330 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.07 OrthoFinder output from all 47 species
Solyc09g005340.3.1 ESP4, Solyc09g005340 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.03 OrthoFinder output from all 47 species
Spa_g15317 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.04 OrthoFinder output from all 47 species
Spa_g18107 No alias component *(Symplekin/Pta1) of Cleavage and... 0.03 OrthoFinder output from all 47 species
Tin_g06134 ESP4 component *(Symplekin/Pta1) of Cleavage and... 0.07 OrthoFinder output from all 47 species
Zm00001e020082_P004 Zm00001e020082 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.09 OrthoFinder output from all 47 species
Zm00001e035946_P001 ESP4, Zm00001e035946 component Symplekin/Pta1 of Cleavage and Polyadenylation... 0.08 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0005737 cytoplasm ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000956 nuclear-transcribed mRNA catabolic process IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005635 nuclear envelope IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006401 RNA catabolic process IEP HCCA
BP GO:0006402 mRNA catabolic process IEP HCCA
BP GO:0006405 RNA export from nucleus IEP HCCA
BP GO:0006406 mRNA export from nucleus IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006997 nucleus organization IEP HCCA
BP GO:0008284 positive regulation of cell population proliferation IEP HCCA
MF GO:0008375 acetylglucosaminyltransferase activity IEP HCCA
BP GO:0009631 cold acclimation IEP HCCA
BP GO:0009736 cytokinin-activated signaling pathway IEP HCCA
BP GO:0009740 gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009891 positive regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009893 positive regulation of metabolic process IEP HCCA
BP GO:0009937 regulation of gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009938 negative regulation of gibberellic acid mediated signaling pathway IEP HCCA
BP GO:0009968 negative regulation of signal transduction IEP HCCA
BP GO:0010476 gibberellin mediated signaling pathway IEP HCCA
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010604 positive regulation of macromolecule metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0010648 negative regulation of cell communication IEP HCCA
MF GO:0016262 protein N-acetylglucosaminyltransferase activity IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0016973 poly(A)+ mRNA export from nucleus IEP HCCA
BP GO:0023057 negative regulation of signaling IEP HCCA
BP GO:0031325 positive regulation of cellular metabolic process IEP HCCA
BP GO:0031328 positive regulation of cellular biosynthetic process IEP HCCA
BP GO:0031507 heterochromatin formation IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0034399 nuclear periphery IEP HCCA
BP GO:0035864 response to potassium ion IEP HCCA
BP GO:0040029 epigenetic regulation of gene expression IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0045814 negative regulation of gene expression, epigenetic IEP HCCA
BP GO:0045893 positive regulation of DNA-templated transcription IEP HCCA
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0048522 positive regulation of cellular process IEP HCCA
BP GO:0050657 nucleic acid transport IEP HCCA
BP GO:0050658 RNA transport IEP HCCA
BP GO:0051028 mRNA transport IEP HCCA
BP GO:0051168 nuclear export IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051236 establishment of RNA localization IEP HCCA
BP GO:0051254 positive regulation of RNA metabolic process IEP HCCA
BP GO:0070828 heterochromatin organization IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1902680 positive regulation of RNA biosynthetic process IEP HCCA
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR022075 Symplekin_C 727 905
No external refs found!