AT1G24250

Description : Paired amphipathic helix (PAH2) superfamily protein

Gene families : OG0000547 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000547_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT1G24250
Cluster	HCCA: Cluster_1

Target	Alias	Description	ECC score	Gene Family Method
AT1G24220	No alias	paired amphipathic helix repeat-containing protein	0.04	OrthoFinder output from all 47 species
AT1G27240	No alias	Paired amphipathic helix (PAH2) superfamily protein	0.03	OrthoFinder output from all 47 species
AT5G35610	No alias	Paired amphipathic helix (PAH2) superfamily protein	0.04	OrthoFinder output from all 47 species
MA_10332683g0010	SNL4	Paired amphipathic helix protein Sin3-like 3...	0.04	OrthoFinder output from all 47 species
Mp3g02880.1	SNL4	component SNL of histone deacetylase machineries	0.02	OrthoFinder output from all 47 species
Pnu_g33066	SNL4	component *(SNL) of histone deacetylase machineries &...	0.02	OrthoFinder output from all 47 species
Spa_g56389	SNL2	not classified & original description: none	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004407	histone deacetylase activity	IEP	HCCA
BP	GO:0006476	protein deacetylation	IEP	HCCA
BP	GO:0006863	purine nucleobase transport	IEP	HCCA
BP	GO:0015851	nucleobase transport	IEP	HCCA
BP	GO:0016575	histone deacetylation	IEP	HCCA
MF	GO:0019213	deacetylase activity	IEP	HCCA
MF	GO:0033558	protein lysine deacetylase activity	IEP	HCCA
BP	GO:0035601	protein deacylation	IEP	HCCA
BP	GO:0098732	macromolecule deacylation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003822	PAH	138	181
IPR003822	PAH	202	243

External Links

No external refs found!

AT1G24250

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation